Articles | Volume 11, issue 1
https://doi.org/10.5194/os-11-139-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/os-11-139-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Using empirical orthogonal functions derived from remote-sensing reflectance for the prediction of phytoplankton pigment concentrations
Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Bussestraße 24, 27570 Bremerhaven, Germany
Institute of Environmental Physics, University of Bremen, Otto-Hahn-Allee 1, 28359 Bremen, Germany
M. H. Taylor
Leibniz Center for Tropical Marine Ecology, Fahrenheitstraße 6, 28359 Bremen, Germany
B. Taylor
Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Bussestraße 24, 27570 Bremerhaven, Germany
T. Dinter
Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Bussestraße 24, 27570 Bremerhaven, Germany
Institute of Environmental Physics, University of Bremen, Otto-Hahn-Allee 1, 28359 Bremen, Germany
R. Röttgers
Helmholtz Zentrum Geesthacht Center of Materials and Coastal Research, Max-Planck-Str., 21502 Geesthacht, Germany
F. Steinmetz
HYGEOS, Euratechnologies, 165 Avenue de Bretagne, 59000 Lille, France
Viewed
Total article views: 5,234 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 11 Sep 2014)
HTML | XML | Total | Supplement | BibTeX | EndNote | |
---|---|---|---|---|---|---|
2,941 | 1,916 | 377 | 5,234 | 1,217 | 160 | 163 |
- HTML: 2,941
- PDF: 1,916
- XML: 377
- Total: 5,234
- Supplement: 1,217
- BibTeX: 160
- EndNote: 163
Total article views: 4,332 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 03 Feb 2015)
HTML | XML | Total | Supplement | BibTeX | EndNote | |
---|---|---|---|---|---|---|
2,436 | 1,542 | 354 | 4,332 | 924 | 152 | 157 |
- HTML: 2,436
- PDF: 1,542
- XML: 354
- Total: 4,332
- Supplement: 924
- BibTeX: 152
- EndNote: 157
Total article views: 902 (including HTML, PDF, and XML)
Cumulative views and downloads
(calculated since 11 Sep 2014)
HTML | XML | Total | BibTeX | EndNote | |
---|---|---|---|---|---|
505 | 374 | 23 | 902 | 8 | 6 |
- HTML: 505
- PDF: 374
- XML: 23
- Total: 902
- BibTeX: 8
- EndNote: 6
Cited
50 citations as recorded by crossref.
- Biogeographical trends in phytoplankton community size structure using adaptive sentinel 3-OLCI chlorophyll a and spectral empirical orthogonal functions in the estuarine-shelf waters of the northern Gulf of Mexico B. Liu et al. 10.1016/j.rse.2020.112154
- Radiometric approach for the detection of picophytoplankton assemblages across oceanic fronts P. Lange et al. 10.1364/OE.398127
- Global Chlorophyll a Concentrations of Phytoplankton Functional Types With Detailed Uncertainty Assessment Using Multisensor Ocean Color and Sea Surface Temperature Satellite Products H. Xi et al. 10.1029/2020JC017127
- HYDROPT: An Open-Source Framework for Fast Inverse Modelling of Multi- and Hyperspectral Observations from Oceans, Coastal and Inland Waters T. Holtrop & H. Van Der Woerd 10.3390/rs13153006
- Hindcast and forecast of daily inundation extents using satellite SAR and altimetry data with rotated empirical orthogonal function analysis: Case study in Tonle Sap Lake Floodplain C. Chang et al. 10.1016/j.rse.2020.111732
- Synergistic Exploitation of Hyper- and Multi-Spectral Precursor Sentinel Measurements to Determine Phytoplankton Functional Types (SynSenPFT) S. Losa et al. 10.3389/fmars.2017.00203
- Underway spectrophotometry in the Fram Strait (European Arctic Ocean): a highly resolved chlorophyll a data source for complementing satellite ocean color Y. Liu et al. 10.1364/OE.26.00A678
- Biome partitioning of the global ocean based on phytoplankton biogeography U. Hofmann Elizondo et al. 10.1016/j.pocean.2021.102530
- Global retrieval of phytoplankton functional types based on empirical orthogonal functions using CMEMS GlobColour merged products and further extension to OLCI data H. Xi et al. 10.1016/j.rse.2020.111704
- Global estimation of phytoplankton pigment concentrations from satellite data using a deep-learning-based model X. Li et al. 10.1016/j.rse.2023.113628
- Floodwater impact on Galveston Bay phytoplankton taxonomy, pigment composition and photo-physiological state following Hurricane Harvey from field and ocean color (Sentinel-3A OLCI) observations B. Liu et al. 10.5194/bg-16-1975-2019
- Differences in Rate and Direction of Shifts between Phytoplankton Size Structure and Sea Surface Temperature H. Waga et al. 10.3390/rs9030222
- Estimation of Secondary Phytoplankton Pigments From Satellite Observations Using Self‐Organizing Maps (SOMs) R. El Hourany et al. 10.1029/2018JC014450
- Machine Learning Application in Water Quality Using Satellite Data N. Hassan & C. Woo 10.1088/1755-1315/842/1/012018
- Changes in phytoplankton community structure during wind-induced fall bloom on the central Chukchi shelf A. Fujiwara et al. 10.1007/s00300-018-2284-7
- Marine big data-driven ensemble learning for estimating global phytoplankton group composition over two decades (1997–2020) Y. Zhang et al. 10.1016/j.rse.2023.113596
- A Self-Attention-Based Deep Learning Model for Estimating Global Phytoplankton Pigment Profiles Y. Yang et al. 10.1109/TGRS.2024.3435044
- Accuracy of Empirical Satellite Algorithms for Mapping Phytoplankton Diagnostic Pigments in the Open Ocean: A Supervised Learning Perspective A. Stock & A. Subramaniam 10.3389/fmars.2020.00599
- Remote estimation of phytoplankton size fractions using the spectral shape of light absorption S. Wang et al. 10.1364/OE.23.010301
- Statistical approach for the retrieval of phytoplankton community structures from in situ fluorescence measurements S. Wang et al. 10.1364/OE.24.023635
- Assessing phytoplankton community composition from hyperspectral measurements of phytoplankton absorption coefficient and remote-sensing reflectance in open-ocean environments J. Uitz et al. 10.1016/j.rse.2015.09.027
- A Novel Statistical Approach for Ocean Colour Estimation of Inherent Optical Properties and Cyanobacteria Abundance in Optically Complex Waters M. Soja-Woźniak et al. 10.3390/rs9040343
- Satellite Observations of Phytoplankton Functional Type Spatial Distributions, Phenology, Diversity, and Ecotones T. Moisan et al. 10.3389/fmars.2017.00189
- High Resolution Water Column Phytoplankton Composition Across the Atlantic Ocean From Ship-Towed Vertical Undulating Radiometry A. Bracher et al. 10.3389/fmars.2020.00235
- Linking satellites to genes with machine learning to estimate phytoplankton community structure from space R. El Hourany et al. 10.5194/os-20-217-2024
- Modeling Photoprotection at Global Scale: The Relative Role of Nonphotosynthetic Pigments, Physiological State, and Species Composition E. Álvarez et al. 10.1029/2018GB006101
- Gaussian decomposition and component pigment spectral analysis of phytoplankton absorption spectra H. Ye et al. 10.1007/s00343-019-8079-z
- Radiative transfer modeling through terrestrial atmosphere and ocean accounting for inelastic processes: Software package SCIATRAN V. Rozanov et al. 10.1016/j.jqsrt.2017.03.009
- Retrieval of Phytoplankton Pigment Composition from Their In Vivo Absorption Spectra Y. Zhang et al. 10.3390/rs13245112
- Retrieval of Phytoplankton Pigments from Underway Spectrophotometry in the Fram Strait Y. Liu et al. 10.3390/rs11030318
- Using Dynamic Ocean Color Provinces to Elucidate Drivers of North Sea Hydrography and Ecology M. Taylor et al. 10.1029/2021JC017686
- Reconstruction of sea-land interactions between terrestrial vegetation cover and water quality constituents in the Mattapoisett Harbor area during the 1991 Hurricane Bob event N. Chang et al. 10.1016/j.jag.2019.101929
- Phytoplankton Pigment Communities Can be Modeled Using Unique Relationships With Spectral Absorption Signatures in a Dynamic Coastal Environment D. Catlett & D. Siegel 10.1002/2017JC013195
- Halocarbon emissions and sources in the equatorial Atlantic Cold Tongue H. Hepach et al. 10.5194/bg-12-6369-2015
- Spatiotemporal distribution of labeled data can bias the validation and selection of supervised learning algorithms: A marine remote sensing example A. Stock 10.1016/j.isprsjprs.2022.02.023
- Estimation of Phytoplankton Accessory Pigments From Hyperspectral Reflectance Spectra: Toward a Global Algorithm A. Chase et al. 10.1002/2017JC012859
- Estimation of the Potential Detection of Diatom Assemblages Based on Ocean Color Radiance Anomalies in the North Sea A. Rêve-Lamarche et al. 10.3389/fmars.2017.00408
- Linking phytoplankton absorption to community composition in Chinese marginal seas D. Sun et al. 10.1016/j.pocean.2021.102517
- Phytoplankton composition from sPACE: Requirements, opportunities, and challenges I. Cetinić et al. 10.1016/j.rse.2023.113964
- Two-decadal estimation of sixteen phytoplankton pigments from satellite observations in coastal waters D. Sun et al. 10.1016/j.jag.2022.102715
- Obtaining Phytoplankton Diversity from Ocean Color: A Scientific Roadmap for Future Development A. Bracher et al. 10.3389/fmars.2017.00055
- GLORIA - A globally representative hyperspectral in situ dataset for optical sensing of water quality M. Lehmann et al. 10.1038/s41597-023-01973-y
- High-resolution physical–biogeochemical structure of a filament and an eddy of upwelled water off northwest Africa W. von Appen et al. 10.5194/os-16-253-2020
- Seasonal dynamics of major phytoplankton functional types in the coastal waters of the west coast of Canada derived from OLCI Sentinel 3A P. Vishnu et al. 10.3389/fmars.2022.1018510
- Field Intercomparison of Radiometer Measurements for Ocean Colour Validation G. Tilstone et al. 10.3390/rs12101587
- Modeling surface ocean phytoplankton pigments from hyperspectral remote sensing reflectance on global scales S. Kramer et al. 10.1016/j.rse.2021.112879
- Iterative spatial leave-one-out cross-validation and gap-filling based data augmentation for supervised learning applications in marine remote sensing A. Stock & A. Subramaniam 10.1080/15481603.2022.2107113
- Global climate-driven sea surface temperature and chlorophyll dynamics R. Venegas et al. 10.1016/j.marenvres.2024.106856
- NASA's surface biology and geology designated observable: A perspective on surface imaging algorithms K. Cawse-Nicholson et al. 10.1016/j.rse.2021.112349
- Using empirical orthogonal functions derived from remote-sensing reflectance for the prediction of phytoplankton pigment concentrations A. Bracher et al. 10.5194/os-11-139-2015
49 citations as recorded by crossref.
- Biogeographical trends in phytoplankton community size structure using adaptive sentinel 3-OLCI chlorophyll a and spectral empirical orthogonal functions in the estuarine-shelf waters of the northern Gulf of Mexico B. Liu et al. 10.1016/j.rse.2020.112154
- Radiometric approach for the detection of picophytoplankton assemblages across oceanic fronts P. Lange et al. 10.1364/OE.398127
- Global Chlorophyll a Concentrations of Phytoplankton Functional Types With Detailed Uncertainty Assessment Using Multisensor Ocean Color and Sea Surface Temperature Satellite Products H. Xi et al. 10.1029/2020JC017127
- HYDROPT: An Open-Source Framework for Fast Inverse Modelling of Multi- and Hyperspectral Observations from Oceans, Coastal and Inland Waters T. Holtrop & H. Van Der Woerd 10.3390/rs13153006
- Hindcast and forecast of daily inundation extents using satellite SAR and altimetry data with rotated empirical orthogonal function analysis: Case study in Tonle Sap Lake Floodplain C. Chang et al. 10.1016/j.rse.2020.111732
- Synergistic Exploitation of Hyper- and Multi-Spectral Precursor Sentinel Measurements to Determine Phytoplankton Functional Types (SynSenPFT) S. Losa et al. 10.3389/fmars.2017.00203
- Underway spectrophotometry in the Fram Strait (European Arctic Ocean): a highly resolved chlorophyll a data source for complementing satellite ocean color Y. Liu et al. 10.1364/OE.26.00A678
- Biome partitioning of the global ocean based on phytoplankton biogeography U. Hofmann Elizondo et al. 10.1016/j.pocean.2021.102530
- Global retrieval of phytoplankton functional types based on empirical orthogonal functions using CMEMS GlobColour merged products and further extension to OLCI data H. Xi et al. 10.1016/j.rse.2020.111704
- Global estimation of phytoplankton pigment concentrations from satellite data using a deep-learning-based model X. Li et al. 10.1016/j.rse.2023.113628
- Floodwater impact on Galveston Bay phytoplankton taxonomy, pigment composition and photo-physiological state following Hurricane Harvey from field and ocean color (Sentinel-3A OLCI) observations B. Liu et al. 10.5194/bg-16-1975-2019
- Differences in Rate and Direction of Shifts between Phytoplankton Size Structure and Sea Surface Temperature H. Waga et al. 10.3390/rs9030222
- Estimation of Secondary Phytoplankton Pigments From Satellite Observations Using Self‐Organizing Maps (SOMs) R. El Hourany et al. 10.1029/2018JC014450
- Machine Learning Application in Water Quality Using Satellite Data N. Hassan & C. Woo 10.1088/1755-1315/842/1/012018
- Changes in phytoplankton community structure during wind-induced fall bloom on the central Chukchi shelf A. Fujiwara et al. 10.1007/s00300-018-2284-7
- Marine big data-driven ensemble learning for estimating global phytoplankton group composition over two decades (1997–2020) Y. Zhang et al. 10.1016/j.rse.2023.113596
- A Self-Attention-Based Deep Learning Model for Estimating Global Phytoplankton Pigment Profiles Y. Yang et al. 10.1109/TGRS.2024.3435044
- Accuracy of Empirical Satellite Algorithms for Mapping Phytoplankton Diagnostic Pigments in the Open Ocean: A Supervised Learning Perspective A. Stock & A. Subramaniam 10.3389/fmars.2020.00599
- Remote estimation of phytoplankton size fractions using the spectral shape of light absorption S. Wang et al. 10.1364/OE.23.010301
- Statistical approach for the retrieval of phytoplankton community structures from in situ fluorescence measurements S. Wang et al. 10.1364/OE.24.023635
- Assessing phytoplankton community composition from hyperspectral measurements of phytoplankton absorption coefficient and remote-sensing reflectance in open-ocean environments J. Uitz et al. 10.1016/j.rse.2015.09.027
- A Novel Statistical Approach for Ocean Colour Estimation of Inherent Optical Properties and Cyanobacteria Abundance in Optically Complex Waters M. Soja-Woźniak et al. 10.3390/rs9040343
- Satellite Observations of Phytoplankton Functional Type Spatial Distributions, Phenology, Diversity, and Ecotones T. Moisan et al. 10.3389/fmars.2017.00189
- High Resolution Water Column Phytoplankton Composition Across the Atlantic Ocean From Ship-Towed Vertical Undulating Radiometry A. Bracher et al. 10.3389/fmars.2020.00235
- Linking satellites to genes with machine learning to estimate phytoplankton community structure from space R. El Hourany et al. 10.5194/os-20-217-2024
- Modeling Photoprotection at Global Scale: The Relative Role of Nonphotosynthetic Pigments, Physiological State, and Species Composition E. Álvarez et al. 10.1029/2018GB006101
- Gaussian decomposition and component pigment spectral analysis of phytoplankton absorption spectra H. Ye et al. 10.1007/s00343-019-8079-z
- Radiative transfer modeling through terrestrial atmosphere and ocean accounting for inelastic processes: Software package SCIATRAN V. Rozanov et al. 10.1016/j.jqsrt.2017.03.009
- Retrieval of Phytoplankton Pigment Composition from Their In Vivo Absorption Spectra Y. Zhang et al. 10.3390/rs13245112
- Retrieval of Phytoplankton Pigments from Underway Spectrophotometry in the Fram Strait Y. Liu et al. 10.3390/rs11030318
- Using Dynamic Ocean Color Provinces to Elucidate Drivers of North Sea Hydrography and Ecology M. Taylor et al. 10.1029/2021JC017686
- Reconstruction of sea-land interactions between terrestrial vegetation cover and water quality constituents in the Mattapoisett Harbor area during the 1991 Hurricane Bob event N. Chang et al. 10.1016/j.jag.2019.101929
- Phytoplankton Pigment Communities Can be Modeled Using Unique Relationships With Spectral Absorption Signatures in a Dynamic Coastal Environment D. Catlett & D. Siegel 10.1002/2017JC013195
- Halocarbon emissions and sources in the equatorial Atlantic Cold Tongue H. Hepach et al. 10.5194/bg-12-6369-2015
- Spatiotemporal distribution of labeled data can bias the validation and selection of supervised learning algorithms: A marine remote sensing example A. Stock 10.1016/j.isprsjprs.2022.02.023
- Estimation of Phytoplankton Accessory Pigments From Hyperspectral Reflectance Spectra: Toward a Global Algorithm A. Chase et al. 10.1002/2017JC012859
- Estimation of the Potential Detection of Diatom Assemblages Based on Ocean Color Radiance Anomalies in the North Sea A. Rêve-Lamarche et al. 10.3389/fmars.2017.00408
- Linking phytoplankton absorption to community composition in Chinese marginal seas D. Sun et al. 10.1016/j.pocean.2021.102517
- Phytoplankton composition from sPACE: Requirements, opportunities, and challenges I. Cetinić et al. 10.1016/j.rse.2023.113964
- Two-decadal estimation of sixteen phytoplankton pigments from satellite observations in coastal waters D. Sun et al. 10.1016/j.jag.2022.102715
- Obtaining Phytoplankton Diversity from Ocean Color: A Scientific Roadmap for Future Development A. Bracher et al. 10.3389/fmars.2017.00055
- GLORIA - A globally representative hyperspectral in situ dataset for optical sensing of water quality M. Lehmann et al. 10.1038/s41597-023-01973-y
- High-resolution physical–biogeochemical structure of a filament and an eddy of upwelled water off northwest Africa W. von Appen et al. 10.5194/os-16-253-2020
- Seasonal dynamics of major phytoplankton functional types in the coastal waters of the west coast of Canada derived from OLCI Sentinel 3A P. Vishnu et al. 10.3389/fmars.2022.1018510
- Field Intercomparison of Radiometer Measurements for Ocean Colour Validation G. Tilstone et al. 10.3390/rs12101587
- Modeling surface ocean phytoplankton pigments from hyperspectral remote sensing reflectance on global scales S. Kramer et al. 10.1016/j.rse.2021.112879
- Iterative spatial leave-one-out cross-validation and gap-filling based data augmentation for supervised learning applications in marine remote sensing A. Stock & A. Subramaniam 10.1080/15481603.2022.2107113
- Global climate-driven sea surface temperature and chlorophyll dynamics R. Venegas et al. 10.1016/j.marenvres.2024.106856
- NASA's surface biology and geology designated observable: A perspective on surface imaging algorithms K. Cawse-Nicholson et al. 10.1016/j.rse.2021.112349
Saved (final revised paper)
Saved (preprint)
Latest update: 13 Dec 2024
Short summary
We have developed a method to assess pigment concentrations from continuous optical measurements by applying an empirical orthogonal function analysis to remote-sensing reflectance data derived from hyperspectral ship-based and multispectral satellite measurements in the Atlantic Ocean. The method allows for the derivation of time series from continuous reflectance data of various pigment groups at various regions, which can be used to study phytoplankton composition and photophysiology.
We have developed a method to assess pigment concentrations from continuous optical measurements...