<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing with OASIS Tables v3.0 20080202//EN" "journalpub-oasis3.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" dtd-version="3.0"><?xmltex \hack{\sloppy}?>
  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">OSD</journal-id>
<journal-title-group>
<journal-title>Ocean Science Discussions</journal-title>
<abbrev-journal-title abbrev-type="publisher">OSD</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Ocean Sci. Discuss.</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1812-0822</issn>
<publisher><publisher-name>Copernicus GmbH</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/osd-12-863-2015</article-id><title-group><article-title>Sunda Shelf Seas: flushing rates and residence times</article-title>
      </title-group><?xmltex \runningtitle{Sunda Shelf Seas residence times}?><?xmltex \runningauthor{B.~Mayer et~al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Mayer</surname><given-names>B.</given-names></name>
          <email>bernhard.mayer@uni-hamburg.de</email>
        <ext-link>https://orcid.org/0000-0003-1697-0880</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Stacke</surname><given-names>T.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-4637-5337</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Stottmeister</surname><given-names>I.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Pohlmann</surname><given-names>T.</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>Institute of Oceanography, University of Hamburg, Bundesstr. 53,
20146 Hamburg, Germany</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Max Planck Institute for Meteorology, Terrestrial Hydrology Group,
Schäferkampsallee 29, 20146 Hamburg, Germany</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Leibniz Institute for Baltic Sea Research, Seestraße 15, 18119
Rostock, Germany</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">B. Mayer (bernhard.mayer@uni-hamburg.de)</corresp></author-notes><pub-date><day>22</day><month>May</month><year>2015</year></pub-date>
      
      <volume>12</volume>
      <issue>3</issue>
      <fpage>863</fpage><lpage>895</lpage>
      <history>
        <date date-type="received"><day>27</day><month>April</month><year>2015</year></date>
           <date date-type="accepted"><day>3</day><month>May</month><year>2015</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under a Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions><self-uri xlink:href="https://os.copernicus.org/articles/.html">This article is available from https://os.copernicus.org/articles/.html</self-uri>
<self-uri xlink:href="https://os.copernicus.org/articles/.pdf">The full text article is available as a PDF file from https://os.copernicus.org/articles/.pdf</self-uri>


      <abstract>
    <p>The region of the Sunda Shelf has an average depth of
approx. 48 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> and is subject to many physical and
biogeochemical processes with a strong impact from human
activities. For the investigation of marine environmental water
properties and quality, it is helpful to have an idea about exchange
rates of water masses in the different parts of this region. Four
numerical models, the global hydrodynamical model MPI-OM, the global
hydrological model MPI-HM, the regional hydrodynamical model HAMSOM
and a Lagrangian tracer model have been utilized to estimate the
flushing rates and residence times in different seas on the Sunda
Shelf. Using decadal averaged monthly transports, the commonly used
flushing rate formula gives rates for the different months of
approximately 40 to 70 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">days</mml:mi></mml:math></inline-formula> for the entire Sunda Shelf. For
most parts of it (Malacca Strait, southern South China Sea, Java Sea),
the results are similar, while for the Gulf of Thailand, the flushing
rates amount to 80 to 170 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">days</mml:mi></mml:math></inline-formula>. The tracer model provides
quite different but very detailed 3-D pictures with residence times of
below 30 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">days</mml:mi></mml:math></inline-formula> to more than two years, depending on the
location within the region, on the starting layer and on the season.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>For investigation of marine environments with focus on the local
biogeochemical processes, on the impact of marine pollution due to
dense coastal human population and on changes of any kind of
environmental properties, it is recommendable to have knowledge
about hydrodynamical water exchange parameters of the regions of
interest, which give an idea about time scales of renewal of the
corresponding water bodies. Without this knowledge, it might be
difficult to distinguish between different processes inducing
changes of water properties (e.g., advection, internal
conversions) and to interpret observational or numerical findings.</p>
      <p>There are many different types of water exchange parameters
mentioned in the literature such as “age”, “flushing rate”,
“residence time”, “exposure time”, “transit time”, “turn
over time”, “influence time”, “half life time” and so
on. Authors like
<xref ref-type="bibr" rid="bib1.bibx2 bib1.bibx50 bib1.bibx35 bib1.bibx44 bib1.bibx23 bib1.bibx30" id="text.1"/>
and others give different definitions for different time
parameters, sometimes even for the same parameters. Some authors
define and compare different time parameters
<xref ref-type="bibr" rid="bib1.bibx35 bib1.bibx30 bib1.bibx18 bib1.bibx6" id="paren.2"><named-content content-type="pre">e.g.</named-content></xref>. <xref ref-type="bibr" rid="bib1.bibx7" id="text.3"/>
relate flushing rates to biogeochemical processes and the
classification of estuaries.</p>
      <p>Certain parameters like the residence time or exposure time are
actually Lagrangian properties of each water particle within the
domain of interest
<xref ref-type="bibr" rid="bib1.bibx2 bib1.bibx50 bib1.bibx44" id="paren.4"/>.</p>
      <p>For the Indonesian Seas, there are only a few estimations on the
renewal of water, they are usually done in connection with
investigation of water exchange and water mixing of deep basins
<xref ref-type="bibr" rid="bib1.bibx46 bib1.bibx47 bib1.bibx12 bib1.bibx17 bib1.bibx37 bib1.bibx22 bib1.bibx5" id="paren.5"/>
or to follow the water of the Indonesian Throughflow (ITF) from
the Pacific Ocean into the Indian Ocean
<xref ref-type="bibr" rid="bib1.bibx45" id="paren.6"/>. <xref ref-type="bibr" rid="bib1.bibx43" id="text.7"/> estimate the
flushing rate for the Gulf of Thailand, which is also part of our
investigation, to be in the range of half a year with a simple
model and based on observed salinity
data. <xref ref-type="bibr" rid="bib1.bibx32" id="text.8"/> applied a hydrodynamical Eulerian
and a Lagrangian tracer model to the Madura Strait.</p>
      <p>The Indonesian Seas are located in a geographical region dominated
by two different and opposing wind systems: the summer monsoon
lasts from approximately May or June until September with
prevailing wind directions from SW to SE, depending on the
geographical position, while the winter monsoon with prevailing
slightly weaker winds from opposite directions (NE to NW) lasts
from November to February or March. The spring and autumn
transition periods in between offer highly variable winds in
strength and direction while changing their main direction. This
meteorological behaviour has a heavy impact on the ocean
circulation. Therefore, we will also focus on the seasonal
dependence of the renewal of the water masses in the regions of
interest.</p>
      <p>A numerical model system was applied to simulate the hydrodynamics
as realistic as possible. Our approach for this article is to
select certain geographical areas on the shallow Sunda Shelf and
calculate their flushing rates <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">τ</mml:mi></mml:math></inline-formula> according to the commonly
used formula <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">τ</mml:mi><mml:mo>=</mml:mo><mml:mi>V</mml:mi><mml:mo>/</mml:mo><mml:mi>Q</mml:mi></mml:mrow></mml:math></inline-formula> with <inline-formula><mml:math display="inline"><mml:mi>V</mml:mi></mml:math></inline-formula> being the volume of the water
body of the region of interest and <inline-formula><mml:math display="inline"><mml:mi>Q</mml:mi></mml:math></inline-formula> being the inflowing volume
transport through all open boundaries of that region. The results
will then be compared with Lagrangian simulation results.</p>
</sec>
<sec id="Ch1.S2">
  <title>Models and methods</title>
<sec id="Ch1.S2.SS1">
  <title>Applied models</title>
      <p>A numerical model system has been applied to receive a most
realistic distribution of currents, sea surface temperature (SST)
and sea surface salinity (SSS). The first component is the global
ocean circulation model MPI-OM <xref ref-type="bibr" rid="bib1.bibx24 bib1.bibx19" id="paren.9"><named-content content-type="pre">Max Planck Institute Ocean
Model,</named-content></xref>, the oceanic part of
the climate model system used for the IPCC world's climate
simulations. It simulated the global ocean circulation on the TP04
grid <xref ref-type="bibr" rid="bib1.bibx20" id="paren.10"/>, having a horizontal resolution of
24 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> (approximately 44 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula> at lower latitudes) and
40 <inline-formula><mml:math display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> layers of increasing thicknesses from top to
bottom. Meteorological forcing data were taken from NCEP/NCAR
<xref ref-type="bibr" rid="bib1.bibx21" id="paren.11"/>. This model delivered the open boundary
forcing data (vertical structure of temperature and salinity, sea
surface height) as six hourly time series for the second component
of the model system, the regional ocean circulation model HAMSOM
<xref ref-type="bibr" rid="bib1.bibx1 bib1.bibx33 bib1.bibx34 bib1.bibx28" id="paren.12"><named-content content-type="pre">Hamburg Shelf Ocean
Model,</named-content></xref>. It
covers the area of the Indonesian Seas (90.5 to
134.4<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E, 16.5<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N to 14.9<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> S, bathymetry
interpolated from the SRTM data (<xref ref-type="bibr" rid="bib1.bibx9" id="altparen.13"/>, see
Fig. <xref ref-type="fig" rid="App1.Ch1.F1"/>) with a horizontal grid resolution of
6 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">min</mml:mi></mml:math></inline-formula> (approximately 11 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">km</mml:mi></mml:math></inline-formula>) and 39 <inline-formula><mml:math display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> layers with
increasing thicknesses from 5 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> at the surface to
550 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> at greater depths. The maximum depth was limited to
6260 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>. At its open boundaries to the Indian Ocean, the
Arafura Sea, the Pacific Ocean and the South China Sea, the
aforementioned values from the global model were used, while the
atmospheric forcing used the same meteorological data as for the
global model. As initial condition for temperature and salinity
distribution in the regional domain, the corresponding 3-D
distributions were interpolated from MPI-OM results at the time of
simulation start.</p>
      <p>Finally, freshwater inflow is required at the river mouths. These
river runoff data were generated with the MPI-HM <xref ref-type="bibr" rid="bib1.bibx42" id="paren.14"><named-content content-type="pre">Max Planck
Institute Hydrology Model,</named-content></xref>. The MPI-HM is a global
hydrological model, which solves the water balance on the land
surface. From meteorological forcing data (temperature,
precipitation and potential evapo-transpiration) taken from the NCC
reanalysis data sets <xref ref-type="bibr" rid="bib1.bibx31" id="paren.15"/>, surface runoff and
subsurface drainage are computed. These quantities are routed over
the land surface following the predefined river flow network DDM30
<xref ref-type="bibr" rid="bib1.bibx8" id="paren.16"/> ending in river mouths, where the fresh water is
released into the ocean. The MPI-HM runs at 0.5<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> resolution
with a daily time step. River routing, however, is internally
computed at 6 hourly time steps to guarantee numerical stability
also for fast flowing rivers. The MPI-HM regularly takes part in
model inter-comparison projects <xref ref-type="bibr" rid="bib1.bibx16 bib1.bibx38" id="paren.17"/>. The river input points for freshwater in the model
topography of the regional model are depicted in Fig. <xref ref-type="fig" rid="App1.Ch1.F1"/>
by red dots.</p>
      <p>The requested most realistic exchange of fresh water, heat and
momentum between ocean and atmosphere limits the thickness of the
ocean surface layer. As a consequence, tidal forcing had to be
switched off (upper layer thickness is 5 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>, tidal range
above the Australian Shelf is even more than that). This is
unproblematic for two reasons. Firstly, we are rather interested in
long-term phenomena and behaviour, where the tides play a minor
role. Secondly, the effect of tidal mixing is taken into account by
larger horizontal and vertical exchange coefficients. They depend
on the shear of the velocity, in HAMSOM and in nature as well. In
shallower ocean regions or regions with large topographic
gradients, the velocity shear (and the turbulence) is naturally
higher, same in the model because of the semi-slip condition at
lateral boundaries and bottom friction. Tides increase the shear
more in regions, which have a higher exchange already. This can be
simulated by an increased factor in the calculation of the
turbulent mixing coefficients. With this, the tidal effect on
mixing is roughly included, even though non-linear effects are
not. A calibration of the horizontal and vertical exchange factors
was performed according to best agreement between simulated and
observed velocity components.</p>
      <p>The simulation period covered the years 1958 to 2012. Model results
were averaged over 24 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">h</mml:mi></mml:math></inline-formula>.</p>
      <p>The fourth component of the model system is a suspended particulate
matter transport model <xref ref-type="bibr" rid="bib1.bibx25 bib1.bibx36" id="paren.18"/>, which was
used as a simple Lagrangian tracer model. In this type of model,
a particle is placed into the center of each model grid cell being
part of the region of interest. The trace of its path and – more
important here – the time needed until it leaves the certain
region is stored. Since we are interested in following passively
the water, we do not take turbulent mixing into account for the
tracer drift, only advection plays a role in this case.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <title>Calculation of water renewal parameters</title>
      <p>The regions of interest for the flushing rates and residence times
are limited to depths less than 200 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>. As shown in
Fig. <xref ref-type="fig" rid="App1.Ch1.F6"/>, upper left panel, with different
semi-transparent shadings, they cover the Gulf of Thailand (red
shading), the shallow southern South China Sea (blue shading), the
Malacca Strait (green shading), the Java Sea (yellow shading) and
the entire Sunda Shelf as the sum of the aforementioned
regions. Their geometric properties like average depth, area and
volume are listed in Table <xref ref-type="table" rid="App1.Ch1.T1"/>, where the number
of 3-D grid cells and with this, the number of particles in the
tracer model starting in the corresponding area, is also given.</p>
      <p>In order to get a clear idea about the role of the different
seasons in this highly variable monsoon-dependent circulation
system, the regional model's horizontal velocities were averaged
to receive monthly values for each of the five decades from 1960
to 2012 (for the last decade, the years 2010 to 2012 were also
added). This procedure enables us to investigate also decadal
variability.</p>
      <p>With these horizontal velocities, flushing rates <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">τ</mml:mi><mml:mo>=</mml:mo><mml:mi>V</mml:mi><mml:mo>/</mml:mo><mml:mi>Q</mml:mi></mml:mrow></mml:math></inline-formula>
were calculated for each domain by using the volume of a domain
according to Table <xref ref-type="table" rid="App1.Ch1.T1"/> and the sum of all
incoming water transports into the corresponding domain.</p>
      <p>For the tracer model simulations, the same decadal monthly
averaged 3-D current fields were taken. Four simulations for two
years were performed using constant velocities of February, May,
August and October of the decade 2000 to 2012 as representatives
for the two fully developed monsoon seasons and the transition
periods. The residence time was taken as the time needed for
a particle to leave the corresponding region of interest for the
first time. For the vertical averages displayed in the result
pictures, the residence times of the layers were weighted
according to the layer thicknesses.</p>
      <p>For reasons of clear differentiation of the two applied methods in
estimating the renewal rates, we will use the term flushing rate
for the analytical calculation and the term residence time for the
estimation of the time parameter from the tracer model
simulations.</p>
</sec>
<sec id="Ch1.S2.SS3">
  <title>Validation of the regional model results</title>
      <p>For the validation of the model results, comparisons with observed
velocities at different key locations within the Indonesian Seas
will be presented. Also comparison of sea surface temperature and
sea surface salinity with satellite data will show the high quality
of the regional model results. For the long-term results,
a climatology of the Indonesian Throughflow will underline the
capability of the numerical hydrodynamical model system.</p>
<sec id="Ch1.S2.SS3.SSS1">
  <title>Comparison of simulated velocities with moored current meter data</title>
      <p>For direct comparison of model results with observed data, measured
velocities from moored current meters at different depths of some
key locations were used kindly provided by the INSTANT project
<xref ref-type="bibr" rid="bib1.bibx40 bib1.bibx41" id="paren.19"><named-content content-type="pre">International Nusantara Stratification and Transport
project,</named-content></xref>. For 2004 to 2006
at depths 50, 150, 350, 750 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>, the time series of simulated
daily and observed hourly data are displayed for the locations
Labani Channel (Makassar) and Lombok Strait in Fig. <xref ref-type="fig" rid="App1.Ch1.F2"/>
and Ombai Strait and Timor Passage in Fig. <xref ref-type="fig" rid="App1.Ch1.F3"/>. The
locations are shown in Fig. <xref ref-type="fig" rid="App1.Ch1.F1"/>. At the end of each graph,
diamonds mark the time averaged observed and simulated
velocities. For comparison, we should keep in mind that observed
data are point measurements, valid actually only for the vicinity
of the corresponding depth level, while simulated data represent
depth ranges of a model layer, even when they might be interpolated
to the requested depth.</p>
      <p>Overall, a satisfying agreement can be stated to the time series as
well as to the average velocities, which show a slight
underestimation by the model at some positions. There are only
a few major discrepancies like in the Makassar 350 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> curve
(peaks in October 2004 and July and August 2006). The Lombok Strait
curves for 150 and 350 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> show peaks a few days or a week
ahead, from which we can conclude that they originate from the
Indian Ocean.</p>
      <p>Most of these “disturbences” are not locally generated but
transferred from the open boundaries into the model domain. Both
open boundaries to the Pacific and the Indian Oceans are sometimes
– from outside – crossed or touched by strong large gyres or
dynamic meandering currents like the South Equatorial Current
(SEC), introducing strong horizontal barotropic pressure and
density gradients along the open boundaries. <xref ref-type="bibr" rid="bib1.bibx10" id="text.20"/>
showed strong intraseasonal variations of the SEC in the eastern
Indian Ocean, which is located and shifting between 10 and
15<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">S</mml:mi></mml:mrow></mml:math></inline-formula> (and even further), just north of our
southern open domain boundary. This is a real challenge for
numerical models and can produce artificially high (or low)
velocities into or out of the model domain, which can send its
signals into the interior of the domain, also upstream certain
currents. This corresponds to signals, different authors found in
the Makassar Strait measured data coming in upstream direction from
the Lombok Strait and being induced by Kelvin waves in the Indian
Ocean <xref ref-type="bibr" rid="bib1.bibx39 bib1.bibx49 bib1.bibx14" id="paren.21"/>. Of
course, also other signals can travel upstream the Makassar
Current.</p>
</sec>
<sec id="Ch1.S2.SS3.SSS2">
  <title>Comparison of simulated SST and SSS with satellite data</title>
      <p>Another presentation of the agreement of simulation results of the
regional model HAMSOM with the real condition is a comparison of
sea surface salinities (SSS) and temperatures (SST). Both are shown
in Fig. <xref ref-type="fig" rid="App1.Ch1.F4"/> including a map for different locations.</p>
      <p>For SST comparison, three regions A, B, C have been selected (see
map in Fig. <xref ref-type="fig" rid="App1.Ch1.F4"/>): (A) a part of the Malacca Strait; (B)
the Spermonde Archipelago near Makassar, Sulawesi; (C) an area east
of middle-southern Sumatra coast including the Bangka Strait and
the Siak river mouth, all for reasons of field work performed
during the projects. MODIS (Moderate-resolution Imaging
Spectroradiometer) data from both EOS-Aqua and EOS-Terra satellites
have been averaged temporally and horizontally over each of these
three regions to receive regional monthly time series. MODIS data
have an accuracy of 0.4 <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> and represent surface
squares of <inline-formula><mml:math display="inline"><mml:mrow><mml:mn>4.6</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">km</mml:mi><mml:mo>×</mml:mo><mml:mn>4.6</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">km</mml:mi></mml:mrow></mml:math></inline-formula>. Simulated SST
time series were created by averaging the upper layer model
temperature for the same regions and then temporally from daily
data. When comparing the time series, we have to keep in mind that
the MODIS data are “skin temperatures”
<xref ref-type="bibr" rid="bib1.bibx4" id="paren.22"/>. They are influenced by diurnal solar surface
heating and by slight cooling due to evaporation
<xref ref-type="bibr" rid="bib1.bibx29" id="paren.23"/> with a heating effect much stronger than the
cooling effect. An average of day and night remote sensing data
leads therefore to slightly higher temperature data than the
subsurface water would show. The model results are “bulk
temperatures” for the model's surface layer with a thickness of
about 5 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> including the model's water level.</p>
      <p>The comparison displayed in Fig. <xref ref-type="fig" rid="App1.Ch1.F4"/> clearly shows that
the seasonality as well as the level are in very good agreement,
the seasonal peak values are over- or underestimated by no more
than 1 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">K</mml:mi></mml:math></inline-formula>. It has been explained in the previous paragraph
that the resulting MODIS averages are slightly higher than
subsurface temperature. Therefore, model data are expected to be
lower than these remote sensing data.</p>
      <p>For SSS comparison, SMOS (soil moisture and ocean salinity sensor)
derived data represent – with an accuracy of 0.4 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">psu</mml:mi></mml:math></inline-formula> –
the upper <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">cm</mml:mi></mml:math></inline-formula> of the ocean surface
<xref ref-type="bibr" rid="bib1.bibx3" id="paren.24"/> and horizontal areas of <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mn mathvariant="normal">1</mml:mn><mml:mo>∘</mml:mo></mml:msup><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">1</mml:mn><mml:mo>∘</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>, averaged from 3 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">days</mml:mi></mml:math></inline-formula> maps to monthly
means. The simulated SSS data are again the values of the upper
model layer (5 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> thick plus water level), which were taken
at the positions indicated in the map of Fig. <xref ref-type="fig" rid="App1.Ch1.F4"/> and
averaged to monthly values. The comparing time series are presented
in panels 1 to 7 of Fig. <xref ref-type="fig" rid="App1.Ch1.F4"/>. Also here, a very good
agreement of simulated and observational data is obvious for the
level and the seasonal variation if there is any. Differences are
usually not more than 1 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">psu</mml:mi></mml:math></inline-formula>. It is impressive to see the
seasonal variation at location 7, eastern Java Sea: During the
first and last quarters of a year, the location is effected by
relatively fresh water coming from the South China Sea. During
boreal summer season, this region is effected by the saltier
Makassar Strait throughflow coming more or less directly from the
North Pacific Ocean.</p>
      <p>A slight overestimation of SSS from the model is expected because
of the thickness of the upper layer. Precipitation has a much
larger impact on the remote sensing data than on the model
data. Since the model does not resolve any vertical profile within
the upper 5 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> of the ocean, fresh water input from
precipitation is immediately mixed into the upper 5 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>
layer, while the remote sensor detects the fresher water within the
upper <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">cm</mml:mi></mml:math></inline-formula> of the ocean. Because our locations
are in the tropical zone with high rain fall rates, we expect the
remote sensing data to be rather lower than the model data, which
can indeed be seen in the comparing time series of
Fig. <xref ref-type="fig" rid="App1.Ch1.F4"/>.</p>
</sec>
<sec id="Ch1.S2.SS3.SSS3">
  <title>Simulated averaged transports through selected sections</title>
      <p>Last but not least, the averaged transports through some sections
in the Indonesian Seas for the periods 2004 to 2006 and 1970 to
2006 are presented in Fig. <xref ref-type="fig" rid="App1.Ch1.F5"/>. For comparison with
estimations derived from observations, published values from
<xref ref-type="bibr" rid="bib1.bibx48 bib1.bibx41 bib1.bibx15" id="text.25"/> and
<xref ref-type="bibr" rid="bib1.bibx11" id="text.26"/> are listed in the figure as well.</p>
      <p>Also from these transport distributions, we can see a principle
agreement of the simulated with expected circulation in the
Indonesian Seas according to the cited literature. Remarkable
differences are the Ombai Strait and Timor Passage transports,
which correspond to the underestimated simulated currents of the
comparing time series of the same locations shown in
Fig. <xref ref-type="fig" rid="App1.Ch1.F3"/>. This is due to the southern part of the eastern
open boundary cutting through the Arafura Sea between New Guinea
and Australia. Obviously, in the model, a part of the water coming
in from the Pacific Ocean leaves through this open boundary instead
of recirculating in the Arafura Sea and subsequently leaving the
area through Ombai Strait and Timor Passage into the Indian Ocean.</p>
      <p>For the Lifamatola Strait, the cited value of <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn>2.5</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Sv</mml:mi></mml:math></inline-formula> from
<xref ref-type="bibr" rid="bib1.bibx48" id="text.27"/> represents only the depth range below
1250 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>, and the authors guess that there is rather
a northward transport in upper regions of the passage leading to
a total southward transport through this section of even less than
2.5 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Sv</mml:mi></mml:math></inline-formula>. Our results of <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn>3.8</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Sv</mml:mi></mml:math></inline-formula>, however, correspond
to the second cited value, <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn>3.2</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">Sv</mml:mi></mml:math></inline-formula>, from
<xref ref-type="bibr" rid="bib1.bibx11" id="text.28"/>.</p>
</sec>
</sec>
</sec>
<sec id="Ch1.S3">
  <title>Results</title>
<sec id="Ch1.S3.SS1">
  <title>Flushing rates</title>
      <p>The results of the analytically calculated flushing rates from the
simulated volume transports into the different domains are depicted
in Fig. <xref ref-type="fig" rid="App1.Ch1.F6"/>. All domains except the Gulf of Thailand
are throughflow domains, and with an increasing size of their area
and volume, the cross-section of the corresponding open boundaries
also increases, which in turn enlarges the possible amount of
inflowing water. Probably due to this fact, the flushing rates are
similar for all regions except the Gulf of Thailand, ranging from
approximately 35 to 65 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">days</mml:mi></mml:math></inline-formula>, while the Gulf of Thailand is
flushed at rates of 75 to 170 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">days</mml:mi></mml:math></inline-formula>. The latter domain shows
the clearest seasonality with lowest flushing rates in July and
August and highest in May and October. For the other domains, the
seasonality is weaker with lowest flushing rates in January and
highest rates in April to June and in October.</p>
      <p>High flushing rates mean low water exchange or slow inflow. During
the transition periods between the two monsoon phases, April/May
and October, there is some stagnation of the circulation, which
partly even changes its direction from one phase to the other. This
leads to a deceleration of water currents and longer flushing
rates. It has to be noted, if directions of transport change,
stagnation is not that obvious for the throughflow domains, because
there is inflow on either open side of the domain.</p>
      <p>The standard deviation (SD) of the monthly inflowing transports (not shown), which were
calculated from daily inflowing transports, range from
approximately 9 to 43 % of the monthly mean volume transport
depending on the month and the domain, the highest occurring for
the Sunda Shelf and the South China Sea. The SD of the flushing
rates (also not shown), calculated from daily flushing rates,
ranges from 40 up to 300 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">days</mml:mi></mml:math></inline-formula> with the maxima in the same
domains. Obviously, there is a higher intra-monthly than seasonal
variability.</p>
      <p>There is no decadal trend visible in the monthly results, and the
decadal variability is non-specific and low. Inter-annual
variability was not investigated because of the well-known general
high variability of the current system in the Indonesian Seas
<xref ref-type="bibr" rid="bib1.bibx26" id="paren.29"/>.</p>
</sec>
<sec id="Ch1.S3.SS2">
  <title>Residence times</title>
      <p>The residence times as calculated from the tracer model simulations
give us a much more detailed pictures and a quite different
impression of the exchange of water in the regions. The model
simulated four times a period of two years, forced with constant
decadal monthly velocity fields of February, May, August and
October, representing the fully developed NW/NE monsoon season,
transition period, the fully developed SE/SW monsoon season and the
transition period from the last to the first season,
respectively. May instead of April was selected because of the long
flushing rates shown in the previous section.</p>
      <p>To get an idea about the general order of residence times and the
portion of particles (representing the water masses) flushed out
after a simulation period of two years, Table <xref ref-type="table" rid="App1.Ch1.T2"/> lists –
for all domains mentioned in the previous flushing rate section –
the percentage of particles, which left the corresponding domain
after two years, and the half life time of each domain defined as
the time needed to flush out 50 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">%</mml:mi></mml:math></inline-formula> of the particles, which
started in the corresponding domain. For direct comparison, the
corresponding flushing rates <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">τ</mml:mi></mml:math></inline-formula> are also listed in
Table <xref ref-type="table" rid="App1.Ch1.T2"/>.</p>
      <p><xref ref-type="bibr" rid="bib1.bibx35" id="text.30"/> defined a “turn over time” as the time needed
to reduce the original uniformly distributed total mass within the
region of interest to a factor of <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi>e</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> or 37 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">%</mml:mi></mml:math></inline-formula>. For
a uniform and constant flow and an immediate redistribution of the
remaining mass after a certain amount left the region, this time
corresponds exactly to the time we defined as flushing
rate. Therefore, looking at the time needed to flush out
63 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">%</mml:mi></mml:math></inline-formula> would give a comparable measure to the flushing
rates. In spite of that, we will compare half life time with
flushing rates, because after a two years simulation, even half
life time is hardly reached in some regions.</p>
      <p>The table shows a great discrepancy to the flushing rates. For May,
August and October, most regions have not reached their half life
times after two simulation years, while the <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">τ</mml:mi></mml:math></inline-formula> formula
calculates flushing rates of mostly two to three months. The entire
Sunda Shelf, on which we will focus in this section, reaches a half
life time for the February simulation of 472 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">days</mml:mi></mml:math></inline-formula>
(<inline-formula><mml:math display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mn>15</mml:mn></mml:mrow></mml:math></inline-formula> months and three weeks), and during the rest of the
second year, <inline-formula><mml:math display="inline"><mml:mrow><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:math></inline-formula> months and a week, only 1 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">%</mml:mi></mml:math></inline-formula> of
the remaining water particles are additionally flushed. The
flushing rate formula gives a value of 46.3 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">days</mml:mi></mml:math></inline-formula>. The Java
Sea reaches its half life time for the February simulation after
88 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">days</mml:mi></mml:math></inline-formula>, for August after 144 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">days</mml:mi></mml:math></inline-formula>, and for October
after 184 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">days</mml:mi></mml:math></inline-formula>, while it is not reached after
2 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">years</mml:mi></mml:math></inline-formula> in the May simulation. There is no general
statement for all regions on the period leading to the fastest
water renewal.</p>
      <p>The vertically averaged residence times for the region of the
entire Sunda Shelf are given for the different seasons in
Fig. <xref ref-type="fig" rid="App1.Ch1.F7"/>. All panels show values from less than
30 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">days</mml:mi></mml:math></inline-formula> to more than 2 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">years</mml:mi></mml:math></inline-formula> (maximum period of
simulation) depending on the distance from the entrance or exit of
a region and the strength of the circulation. In contrary to the
previously calculated flushing rates, most areas show residence
times between one and two years. In the February panel,
Fig. <xref ref-type="fig" rid="App1.Ch1.F7"/>, upper left, we can see a retroflection area
or a part of a large gyre at the northeastern entrance to the
region with residence times of 3 quarters of a year at the
most. The shape of the pattern north of this suggests that an
inflow just south of the Vietnamese coast partly turns around to
leave the Sunda Shelf area immediately, partly touches the Gulf of
Thailand without effecting it. Then, the flow proceeds southward
along the West-Malay coast, partly leaves through the Singapore
Strait into the Malacca Strait and partly proceeds through the
Karimata Strait. One part leaves to the south through the Sunda
Strait, another part flows to the east to flush the Java Sea, which
is visible from the band of residence times less than
270 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">days</mml:mi></mml:math></inline-formula> with decreasing values to the east, while the
surrounding parts show residence times of more than a year.</p>
      <p>During the summer monsoon in August (Fig. <xref ref-type="fig" rid="App1.Ch1.F7"/>, lower
left panel), these patterns are quite different. The general
circulation turned around and shows longer residence times, which
is also evident from Table <xref ref-type="table" rid="App1.Ch1.T2"/>. Water movement seems to be
slower during this season. In the northeast, we see a distribution
indicating a retroflection the other way around than in
February. In the Java Sea, the direction of the main flow is also
opposite during this season. It is westward with water coming from
the Makassar Strait into the Java Sea. The Gulf of Thailand is also
effected by the current system and slowly flushed. This general
flow is possible, because the winterly meteorological blocking
situation stops in April/May and the water masses, which were piled
up, are released. Western parts of the near-surface Makassar
throughflow can now turn westward into the Java Sea.</p>
      <p>In May, after transition from boreal winter to summer monsoon
season (Fig. <xref ref-type="fig" rid="App1.Ch1.F7"/>, upper right panel), the situation
shows similar behaviour like the flushing rates: long residence
times everywhere. But for the Gulf of Thailand, we can see the
release of the accumulated water masses in the Gulf during the
previous season.</p>
      <p>The simulation results for October (Fig. <xref ref-type="fig" rid="App1.Ch1.F7"/>, lower
right panel) represent the other transition period, also with
changing but no prevailing wind directions. The distribution shows
even longer residence times than in May indicating a stagnation
period, when the main flow direction turns around and the water
transport starts to accumulate water masses again in the Indonesian
Seas rather than moving through the regions
<xref ref-type="bibr" rid="bib1.bibx13 bib1.bibx26" id="paren.31"><named-content content-type="pre">e.g.</named-content></xref>.</p>
      <p>For the Gulf of Thailand as part of the Sunda Shelf region, the
residence time in February is simulated mostly with more than two
years. Obviously, the inflowing currents retroflect already close
to their entrance in a way that there is hardly exchange for
central and coastal parts of the Gulf. As mentioned in the previous
paragraph, during the boreal winter season, the northerly monsoon
winds pile up the water in the southern South China Sea (SCS),
which blocks the outflow from the Gulf. Additionally, the southward
flow along the Vietnamese coast is topographically hindered from
flowing into the Gulf by the Vietnamese most southeastern tip,
which directs the flow rather towards the West-Malaysia. The above
mentioned band of lower residence times south of Borneo support
this interpretation about the flow pattern. The onset of this
situation in October shows the same effect for the Gulf
area. During the SE monsoon season, the currents obviously intrude
further into the Gulf and decrease the residence time to ca. 1.75
to 2 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">years</mml:mi></mml:math></inline-formula>.</p>
      <p>In the Malacca Strait, we can also detect two very different
situations, which supports the seasonal flow patterns published
already by <xref ref-type="bibr" rid="bib1.bibx27" id="text.32"/>. In February, the distribution
shows a relatively fast flowing band along the coast of Sumatra
with a direction towards the Andaman Sea. Long residence times
south and east of the Singapore Strait indicate this northwest
directed flow into and within the Malacca Strait. The above
mentioned relatively high water levels produce this flow field. In
boreal summer, this extra gradient is relieved, and we have low
currents with very high residence times in the narrow part of the
strait but more exchange of water in the wider part, which is
transported mainly from the Andaman Sea.</p>
      <p>Since we are able to follow the tracers in three dimensions, we can
also distinguish the residence times for tracers starting at
different depth levels, shown for the upper two and the fourth
model layers for the February and August simulations in
Fig. <xref ref-type="fig" rid="App1.Ch1.F8"/>. The corresponding model layers have
thicknesses of 5, 7 and 10 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>, representing the depth ranges
0 to 5, 5 to 12 and 22 to 32 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>, respectively.</p>
      <p>It is interesting to see the very different residence times in the
single layer pictures with non-averaged values. In general, the
described above features are more obvious. For the surface layer,
many areas within the Sunda Shelf region show residence times of
less than 30 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">days</mml:mi></mml:math></inline-formula> to less than half a year. There are some
thin lines of long residence times within areas of short residence
times. They are caused by particles transported directly to and
around islands and then being caught by the “current shadows”
behind islands, which extends their time to leave the region.</p>
      <p>According to the different residence times for different layers in
both simulations and the short residence times in upper layers, the
local wind plays a dominant role for the direction and the strength
of the water transport in the shallow Sunda Shelf region, while
barotropic gradients are of minor importance.</p>
</sec>
</sec>
<sec id="Ch1.S4">
  <title>Discussion</title>
      <p>Two different methods were applied to estimate hydrodynamic time
parameters connected with renewal of water body of a certain
region, here: the Sunda Shelf and its sub regions: the analytical
calculation of the flushing rates and the residence times estimated
from tracer model results. The two methods delivered very different
results.</p>
      <p>The analytical approach of using the formula <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">τ</mml:mi><mml:mo>=</mml:mo><mml:mi>V</mml:mi><mml:mo>/</mml:mo><mml:mi>Q</mml:mi></mml:mrow></mml:math></inline-formula> is
appropriate only for channel-like or semi-enclosed regions with
a rather narrow inlet and a uniform flow field. It is too simple
for regions with distinct and diverse circulation
patterns. Recirculation of water, which enters the domain (<inline-formula><mml:math display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> inflow) but immediately exits the domain due to a small loop, will
alter the results leading to a strong underestimation of renewal
times. This is an important point to be considered, as an example,
for the investigation of renewal times of water bodies in bays,
where sustainable aquaculture is planed and has to be dimensioned
to avoid harm to the natural environment.</p>
      <p>The application of Lagrangian tracer models to follow water
particles and estimate a horizontal or 3-D distribution of the
residence times from typical season-averaged flow fields is also
not realistic, because there are no monthly averaged situations
lasting longer than a month. However, it provides a much better
idea about the time ranges for water renewal and a more detailed
view on the locations with rather stagnating and rather quickly
exchanged water masses. Additionally, it gives us a clearer idea
about the influence of the seasons.</p>
      <p>The connection between both methods is – for an idealized case of
uniform flow and immediate mixing of all remaining with new water
– the time reached after exchanging an amount of 63 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">%</mml:mi></mml:math></inline-formula> of
the original water <xref ref-type="bibr" rid="bib1.bibx35" id="paren.33"/>. Instead, we used half life
time (exchange of only 50 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">%</mml:mi></mml:math></inline-formula>), because even this was hardly
reached in many regions after the two years simulation. But it
clearly shows that both methods deliver results far away from each
other with flushing rates of usually less than 100 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">days</mml:mi></mml:math></inline-formula> and
residence times of usually more than 730 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">days</mml:mi></mml:math></inline-formula>.</p>
      <p>For the Indonesian shelf seas, only the tracer model results
indicated and visualized that there are big differences in water
exchange between locations within the domains of interest and
between seasons.</p>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <title>Summary and conclusions</title>
      <p>For the interdisciplinary investigation of marine environments such
as shelf seas, gulfs and bays, it is helpful to have knowledge
about basic physical parameters of those regions. One important
parameter is the rate of renewal of the water within a certain
region, which gives an idea about the importance of external
(advective) and internal processes. This is essential for basic
environmental research as well as applied investigations, e.g. for
the development of sustainable aquaculture. Two methods were
applied to estimate hydrodynamical parameters connected with the
process of water renewal within certain regions. From numerical
hydrodynamical model results, one method calculated the flushing
rates according to the formula <inline-formula><mml:math display="inline"><mml:mrow><mml:mi mathvariant="italic">τ</mml:mi><mml:mo>=</mml:mo><mml:mi>V</mml:mi><mml:mo>/</mml:mo><mml:mi>Q</mml:mi></mml:mrow></mml:math></inline-formula> as the quotient of
the volume of a region like the Sunda Shelf and the inflowing water
volume transport through all lateral open boundaries. The other
method estimated the residence times by applying a Lagrangian
tracer model using the same numerical volume transports to follow
each water parcel of a region of interest. Results were very
different. Especially in case of existing recirculation patterns,
the flushing rate calculations immensely underestimate the time
needed for water renewal. In contrary, the tracer model application
gives a detailed picture concerning the variability in time
(seasons) as well as in 3-D space within the region of interest.</p>
      <p>Focusing on the entire Sunda Shelf (average depth 49 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>),
the flushing rate formula gives values between 40
and less than 60 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">days</mml:mi></mml:math></inline-formula> with low seasonal and decadal
variation. The tracer model results give values of 1 to
2 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">years</mml:mi></mml:math></inline-formula> of residence time for most parts in the region for
the vertical average but faster water exchange (residence time less
than 1 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">year</mml:mi></mml:math></inline-formula>) for most parts of the upper three layers (0 to
22 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>). Certain areas like the Gulf of Thailand and the
Malacca Strait seem to be rather slowly flushed during most time of
the year.</p>
      <p>In conclusion, the results of the two different methods to estimate
the water renewal rates in certain regions recommend the
application of Lagrangian tracer models rather than just
a calculation with the simple formula. The formula cannot take
recirculation patterns into account, which might mislead the
investigators towards dramatic underestimations of the times needed
under realistic conditions to exchange entire water bodies.</p>
</sec>

      
      </body>
    <back><ack><title>Acknowledgements</title><p>This project was funded by the German Ministry of Education and
Research under the grant 03F0642D in the frame of the
German-Indonesian cooperation SPICE III.</p></ack><ref-list>
    <title>References</title>

      <ref id="bib1.bibx1"><label>Backhaus(1985)</label><mixed-citation>
Backhaus, J. O.: A three-dimensional model for the simulation of shelf sea dynamics, Deutsche Hydrographische Zeitschrift, 38, 165–187, 1985.</mixed-citation></ref>
      <ref id="bib1.bibx2"><label>Bolin and Rohde(1973)</label><mixed-citation>
Bolin, B. and Rohde, H.: A note on the concepts of age distribution and transit time in natural reservoirs, Tellus, 25, 58–62, 1973.</mixed-citation></ref>
      <ref id="bib1.bibx3"><label>Boutin et al.(2014)Boutin, Martin, Reverdin, Morisset, Yin, Centurioni, and Reul</label><mixed-citation>Boutin, J., Martin, N., Reverdin, G., Morisset, S., Yin, X.,
Centurioni, L., and Reul, N.: Sea surface salinity under rain cells:
SMOS satellite and in situ drifters observations,
J. Geophys. Res.-Oceans, 5533–5545,
doi:<ext-link xlink:href="http://dx.doi.org/10.1002/2014JC010070">10.1002/2014JC010070</ext-link>,
2014.</mixed-citation></ref>
      <ref id="bib1.bibx4"><label>Brown and Minnett(1999)</label><mixed-citation>Brown, O. B. and Minnett, P. J.: MODIS Infrared Sea Surface Temperature Algorithm Theoretical Basis Document, Version 2.0, Tech. Rep. Miami, FL 33149-1098, University of Miami, available at: <uri>http://modis.gsfc.nasa.gov/data/atbd/atbd_mod25.pdf</uri>, 1999.</mixed-citation></ref>
      <ref id="bib1.bibx5"><label>Chang et al.(2010)Chang, Hsu, Tai, Tang, and Chang</label><mixed-citation>Chang, Y.-T., Hsu, W.-L., Tai, J.-H., Tang, T., and Chang, M.-H.: Cold deep water in the South China Sea, J. Oceanogr., 66, 183–190,
doi:<ext-link xlink:href="http://dx.doi.org/10.1007/s10872-010-0016-x">10.1007/s10872-010-0016-x</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bibx6"><label>Delhez(2013)</label><mixed-citation>Delhez, É. J. M.: On the concept of exposure time, Cont. Shelf. Res., 71, 27–36,
doi:<ext-link xlink:href="http://dx.doi.org/10.1016/j.csr.2013.09.026">10.1016/j.csr.2013.09.026</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx7"><label>Delhez et al.(2004)Delhez, Heemink, and Deleersnijder</label><mixed-citation>Delhez, É. J. M., Heemink, A. W., and Deleersnijder, É.: Residence time in a semi-enclosed domain from the solution of an adjoint problem, Estuar. Coast. Shelf S., 61, 691–702,
doi:<ext-link xlink:href="http://dx.doi.org/10.1016/j.ecss.2004.07.013">10.1016/j.ecss.2004.07.013</ext-link>, 2004.</mixed-citation></ref>
      <ref id="bib1.bibx8"><label>Döll and Lehner(2002)</label><mixed-citation>Döll, P. and Lehner, B.: Validation of a new global 30-min drainage direction map, J. Hydrol., 258, 214–231,
doi:<ext-link xlink:href="http://dx.doi.org/10.1016/s0022-1694(01)00565-0">10.1016/s0022-1694(01)00565-0</ext-link>, 2002.</mixed-citation></ref>
      <ref id="bib1.bibx9"><label>Farr et al.(2007)Farr, Rosen, Caro, Crippen, Duren, Hensley, Kobrick, Paller, Rodriguez, Roth, Seal, Shaffer, Shimada, Umland, Werner, Oskin, Burbank, and Alsdorf</label><mixed-citation>Farr, T. G., Rosen, P. A., Caro, E., Crippen, R., Duren, R., Hensley, S., Kobrick, M., Paller, M., Rodriguez, E., Roth, L., Seal, D., Shaffer, S., Shimada, J., Umland, J., Werner, M., Oskin, M., Burbank, D., and Alsdorf, D.: The shuttle radar topography mission, Rev. Geophys., 45, RG2004,
doi:<ext-link xlink:href="http://dx.doi.org/10.1029/2005RG000183">10.1029/2005RG000183</ext-link>, 2007.</mixed-citation></ref>
      <ref id="bib1.bibx10"><label>Feng and Wijffels(2002)</label><mixed-citation>Feng, M. and Wijffels, S.: Intraseasonal variability in the south equatorial current of the East Indian Ocean, J. Phys. Oceanogr., 32, 265–277,
doi:<ext-link xlink:href="http://dx.doi.org/10.1175/1520-0485(2002)032&lt;0265:IVITSE&gt;2.0.CO;2">10.1175/1520-0485(2002)032&lt;0265:IVITSE&gt;2.0.CO;2</ext-link>, 2002.</mixed-citation></ref>
      <ref id="bib1.bibx11"><label>Feng et al.(2013)Feng, Liu, Wang, Wang, Yu, and Yuan</label><mixed-citation>Feng, X., Liu, H. L., Wang, F. C., Wang, F. C., Yu, Y. Q., and Yuan, D. L.: Indonesian throughflow in an eddy-resolving ocean model, Chinese Sci. Bull., 58, 4504–4514,
doi:<ext-link xlink:href="http://dx.doi.org/10.1007/s11434-013-5988-7">10.1007/s11434-013-5988-7</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx12"><label>Ffield and Gordon(1992)</label><mixed-citation>Ffield, A. and Gordon, A. L.: Vertical mixing in the indonesian thermocline, J. Phys. Oceanogr., 22, 184–195,
doi:<ext-link xlink:href="http://dx.doi.org/10.1175/1520-0485(1992)022&lt;0184:VMITIT&gt;2.0.CO;2">10.1175/1520-0485(1992)022&lt;0184:VMITIT&gt;2.0.CO;2</ext-link>, 1992.</mixed-citation></ref>
      <ref id="bib1.bibx13"><label>Gordon and Susanto(2001)</label><mixed-citation>
Gordon, A. L. and Susanto, R. D.: Banda Sea surface-layer divergence, Ocean Dynam., 52, 2–10, 2001.</mixed-citation></ref>
      <ref id="bib1.bibx14"><label>Gordon et al.(2010)Gordon, Sprintall, van Aken, Susanto, Wijffels, Molcard, Ffield, Pranowo, and Wirasantosa</label><mixed-citation>Gordon, A. L., Sprintall, J., van Aken, H. M., Susanto, D., Wijffels, S., Molcard, R., Ffield, A., Pranowo, W., and Wirasantosa, S.: The Indonesian throughflow during 2004–2006 as observed by the INSTANT program, Dynam. Atmos. Oceans, 50, 115–128,
doi:<ext-link xlink:href="http://dx.doi.org/10.1016/j.dynatmoce.2009.12.002">10.1016/j.dynatmoce.2009.12.002</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bibx15"><label>Gordon et al.(2012)Gordon, Huber, Metzger, Susanto, Hurlburt, and Adi</label><mixed-citation>Gordon, A. L., Huber, B. A., Metzger, E. J., Susanto, R. D., Hurlburt, H. E., and Adi, T. R.: South China Sea throughflow impact on the Indonesian throughflow, Geophys. Res. Lett., 39, L11602,
doi:<ext-link xlink:href="http://dx.doi.org/10.1029/2012GL052021">10.1029/2012GL052021</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx16"><label>Haddeland et al.(2011)Haddeland, Clark, Franssen, Ludwig, Voss, Arnell, Bertrand, Best, Folwell, Gerten, Gomes, Gosling, Hagemann, Hanasaki, Harding, Heinke, Kabat, Koirala, Oki, Polcher, Stacke, Viterbo, Weedon, and Yeh</label><mixed-citation>Haddeland, I., Clark, D., Franssen, W., Ludwig, F., Voss, F., Arnell, N., Bertrand, N., Best, M., Folwell, S., Gerten, D., Gomes, S., Gosling, S., Hagemann, S., Hanasaki, N., Harding, R., Heinke, J., Kabat, P., Koirala, S., Oki, T., Polcher, J., Stacke, T., Viterbo, P., Weedon, G., and Yeh, P.: Multimodel estimate of the global terrestrial water balance: setup and first results, J. Hydrometeorol., 12, 869–884,
doi:<ext-link xlink:href="http://dx.doi.org/10.1175/2011JHM1324.1">10.1175/2011JHM1324.1</ext-link>, 2011.</mixed-citation></ref>
      <ref id="bib1.bibx17"><label>Hautala et al.(1996)Hautala, Reid, and Bray</label><mixed-citation>Hautala, S. L., Reid, J. L., and Bray, N.: The distribution and mixing of Pacific water masses in the Indonesian Seas, J. Geophys. Res., 101, 12375–12389,
doi:<ext-link xlink:href="http://dx.doi.org/10.1029/96JC00037">10.1029/96JC00037</ext-link>, 1996.</mixed-citation></ref>
      <ref id="bib1.bibx18"><label>Jouon et al.(2006)Jouon, Douillet, Ouillon, and Fraunie</label><mixed-citation>Jouon, A., Douillet, P., Ouillon, S., and Fraunie, P.: Calculations of hydrodynamic time parameters in a semi-opened coastal zone using a 3D hydrodynamic model, Cont. Shelf. Res., 26, 1395–1415,
doi:<ext-link xlink:href="http://dx.doi.org/10.1016/j.csr.2005.11.014">10.1016/j.csr.2005.11.014</ext-link>, 2006.</mixed-citation></ref>
      <ref id="bib1.bibx19"><label>Jungclaus et al.(2006)Jungclaus, Botzet, Haak, Keenlyside, Luo, Latif, Marotzke, Mikolajewicz, and Roeckner</label><mixed-citation>
Jungclaus, J. H., Botzet, M., Haak, H., Keenlyside, N., Luo, J.-J., Latif, M., Marotzke, J., Mikolajewicz, U., and Roeckner, E.: Ocean circulation and tropical variability in the coupled model ECHAM5/MPI-OM, J. Climate, 19, 3952–3972, 2006.</mixed-citation></ref>
      <ref id="bib1.bibx20"><label>Jungclaus et al.(2013)Jungclaus, Fischer, Haak, Lohmann, Marotzke, Matei, Mikolajewicz, Notz, and von Storch</label><mixed-citation>Jungclaus, J. H., Fischer, N., Haak, H., Lohmann, K., Marotzke, J., Matei, D., Mikolajewicz, U., Notz, D., and von Storch, J. S.: Characteristics of the ocean simulations in the Max Planck Institute Ocean Model (MPIOM) the ocean component of the MPI-Earth system model, Journal of Advances in Modeling Earth Systems, 5, 422–446,
doi:<ext-link xlink:href="http://dx.doi.org/10.1002/jame.20023">10.1002/jame.20023</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx21"><label>Kalnay et al.(1996)Kalnay, Kanamitsu, Kistler, Collins, Deaven, Gandin, Iredell, Saha, White, Woollen, Zhu, Leetmaa, Reynolds, Chelliah, Ebisuzaki, Higgins, Janowiak, Mo, Ropelewski, Wang, Jenne, Joseph</label><mixed-citation>
Kalnay, E. Kanamitsu, M., Kistler, R., Collins, W., Deaven, D., Gandin, L., Iredell, M., Saha, S., White, G., Woollen, J., Zhu, Y., Leetmaa, A., Reynolds, R., Chelliah, M., Ebisuzaki, W., Higgins, W., Janowiak, J., Mo, K. C., Ropelewski, C., Wang, J., Jenne, R., Joseph, D: The NCEP/NCAR Reanalysis 40-year project, B. Am. Meteorol. Soc., 77, 437–471, 1996.</mixed-citation></ref>
      <ref id="bib1.bibx22"><label>Liu et al.(2010)Liu, You, Bao, and Wu</label><mixed-citation>Liu, Y., You, Y., Bao, X., and Wu, D.: The flushing and exchange of
the South China Sea derived from salt and mass conservation, Deep-sea
research. Part 2, Topical studies in oceanography, Deep-Sea
Res. Pt. II, 57, 1212–20,
doi:<ext-link xlink:href="http://dx.doi.org/10.1016/j.dsr2.2009.12.010">10.1016/j.dsr2.2009.12.010</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bibx23"><label>Luff and Pohlmann(1995)</label><mixed-citation>
Luff, R. and Pohlmann, T.: Calculation of Water Exchange Times in the ICES-Boxes with a Eulerian Dispersion Model using a Half-Life Time Approach, German Journal of Hydrograohy, 47, 287–299, 1995.</mixed-citation></ref>
      <ref id="bib1.bibx24"><label>Marsland et al.(2003)Marsland, Haak, Jungclaus, Latif, and Röske</label><mixed-citation>
Marsland, S. J., Haak, H., Jungclaus, J. H., Latif, M., and Röske, F.: The Max-Planck-Institute global ocean/sea ice model with orthogonal curvilinear coordinates, Ocean Model., 5, 91–127, 2003.</mixed-citation></ref>
      <ref id="bib1.bibx25"><label>Mayer(1995)</label><mixed-citation>
Mayer, B.: A threedimensional numerical SPM transport model with
application to the German Bight, in: GKSS Report 95/E/59, edited by:
GKSS Forschungszentrum Geesthacht GmbH, GKSS, 96 pp., 1995 (in German).</mixed-citation></ref>
      <ref id="bib1.bibx26"><label>Mayer and Damm(2012)</label><mixed-citation>Mayer, B. and Damm, P. E.: The Makassar Strait throughflow and its jet, J. Geophys. Res., 117, C07020,
doi:<ext-link xlink:href="http://dx.doi.org/10.1029/2011JC007809">10.1029/2011JC007809</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx27"><label>Mayer and Pohlmann(2014)</label><mixed-citation>Mayer, B. and Pohlmann, T.: Simulation of organic pollutants: first
step towards an adaptation to the Malacca Strait, Asian Journal of
Water, Environment and Pollution, 11, 75–86, available at:
<uri>http://iospress.metapress.com/content/00705368j784503w</uri>, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx28"><label>Mayer et al.(2010)Mayer, Damm, Pohlmann, and Rizal</label><mixed-citation>Mayer, B., Damm, P. E., Pohlmann, T., and Rizal, S.: What is driving the ITF? An illumination of the Indonesian throughflow with a numerical nested model system, Dynam. Atmos. Oceans, 50, 301–312,
doi:<ext-link xlink:href="http://dx.doi.org/10.1016/j.dynatmoce.2010.03.002">10.1016/j.dynatmoce.2010.03.002</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bibx29"><label>Minnett(2003)</label><mixed-citation>Minnett, P. J.: Radiometric measurements of the sea-surface skin temperature: the competing roles of the diurnal thermocline and the cool skin, Int. J. Remote Sens., 24, 5033–5047,
doi:<ext-link xlink:href="http://dx.doi.org/10.1080/0143116031000095880">10.1080/0143116031000095880</ext-link>, 2003.</mixed-citation></ref>
      <ref id="bib1.bibx30"><label>Monsen et al.(2002)Monsen, Cloern, Lucas, and Monismith</label><mixed-citation>Monsen, N. E., Cloern, J. E., Lucas, L. V., and Monismith, S. G.: A comment on the use of flushing time, residence time, and age as transport time scales, Limnol. Oceanogr., 47, 1545–1553,
doi:<ext-link xlink:href="http://dx.doi.org/10.4319/lo.2002.47.5.1545">10.4319/lo.2002.47.5.1545</ext-link>, 2002.</mixed-citation></ref>
      <ref id="bib1.bibx31"><label>Ngo-Duc et al.(2005)Ngo-Duc, Polcher, and Laval</label><mixed-citation>Ngo-Duc, T., Polcher, J., and Laval, K.: A 53-year forcing data set for land surface models, J. Geophys. Res., 110, D06116,
doi:<ext-link xlink:href="http://dx.doi.org/10.1029/2004jd005434">10.1029/2004jd005434</ext-link>, 2005.</mixed-citation></ref>
      <ref id="bib1.bibx32"><label>Nugrahadi et al.(2013)Nugrahadi, Duwe, Schroeder, and Goldmann</label><mixed-citation>
Nugrahadi, M. S., Duwe, K., Schroeder, F., and Goldmann, D.: Seasonal variability of the Water Residence Time in the Madura Strait, East Java, Indonesia, Asian Journal of Water, Environment and Pollution, 10, 117–128, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx33"><label>Pohlmann(1996)</label><mixed-citation>
Pohlmann, T.: Predicting the thermocline in a circulation model of the North Sea, Part 1: Model description, calibration and verification, Cont. Shelf. Res., 16, 131–146, 1996.</mixed-citation></ref>
      <ref id="bib1.bibx34"><label>Pohlmann(2006)</label><mixed-citation>
Pohlmann, T.: A meso-scale model of the central and southern North Sea: consequences of an improved resolution, Cont. Shelf. Res., 26, 2367–2385, 2006.</mixed-citation></ref>
      <ref id="bib1.bibx35"><label>Prandle(1984)</label><mixed-citation>Prandle, D.: A modelling study of the mixing of 137Cs in the seas of the European Continental Shelf, Philos. T. R. Soc. A, 310, 407–436, available at: <uri>http://www.jstor.org/stable/37423</uri>, 1984.</mixed-citation></ref>
      <ref id="bib1.bibx36"><label>Puls et al.(1997)Puls, Heinrich, and Mayer</label><mixed-citation>Puls, W., Heinrich, H., and Mayer, B.: Suspended particulate matter budget for the German Bight, Mar. Pollut. Bul., 34, 398–409,
doi:<ext-link xlink:href="http://dx.doi.org/10.1016/S0025-326X(96)00161-0">10.1016/S0025-326X(96)00161-0</ext-link>, 1997.</mixed-citation></ref>
      <ref id="bib1.bibx37"><label>Qu et al.(2006)Qu, Girton, and Whitehead</label><mixed-citation>Qu, T. D., Girton, J. B., and Whitehead, J. A.: Deepwater overflow through Luzon Strait, J. Geophys. Res.-Oceans, 111, C01002,
doi:<ext-link xlink:href="http://dx.doi.org/10.1029/2005JC003139">10.1029/2005JC003139</ext-link>, 2006.</mixed-citation></ref>
      <ref id="bib1.bibx38"><label>Schewe et al.(2014)Schewe, Heinke, Gerten, Haddeland, Arnell, Clark, Dankers, Eisner, Fekete, Colón-González, Gosling, Kim, Liu, Masaki, Portmann, Satoh, Stacke, Tang, Wada, Wisser, Albrecht, Frieler, Piontek, Warszawski, and Kabat</label><mixed-citation>Schewe, J., Heinke, J., Gerten, D., Haddeland, I., Arnell, N. W., Clark, D. B., Dankers, R., Eisner, S., Fekete, B. M., Colón-González, F. J., Gosling, S. N., Kim, H., Liu, X., Masaki, Y., Portmann, F. T., Satoh, Y., Stacke, T., Tang, Q., Wada, Y., Wisser, D., Albrecht, T., Frieler, K., Piontek, F., Warszawski, L., and Kabat, P.: Multimodel assessment of water scarcity under climate change, P. Natl. Acad. Sci. USA, 111, 3245–3250,
doi:<ext-link xlink:href="http://dx.doi.org/10.1073/pnas.1222460110">10.1073/pnas.1222460110</ext-link>, 2014.</mixed-citation></ref>
      <ref id="bib1.bibx39"><label>Sprintall et al.(2000)Sprintall, Gordon, Murtugudde, and Susanto</label><mixed-citation>Sprintall, J., Gordon, A. L., Murtugudde, R., and Susanto, R. D.: A semiannual Indian Ocean forced Kelvin wave observed in the Indonesian seas in May 1997, J. Geophys. Res., 105, 17217–17230,
doi:<ext-link xlink:href="http://dx.doi.org/10.1029/2000JC900065">10.1029/2000JC900065</ext-link>, 2000.</mixed-citation></ref>
      <ref id="bib1.bibx40"><label>Sprintall et al.(2004)Sprintall, Wijffels, Gordon, Ffield, Molcard, Susanto, Soesilo, Sopaheluwakan, Surachman, and van Aken</label><mixed-citation>
Sprintall, J., Wijffels, S., Gordon, A. L., Ffield, A., Molcard, R.,
Susanto, R. D., Soesilo, I., Sopaheluwakan, J., Surachman, Y., and van
Aken, H. M.: INSTANT: new international array to measure the
Indonesian throughflow, EOS T. Am. Geophys. Un., 85, 369–376, 2004.</mixed-citation></ref>
      <ref id="bib1.bibx41"><label>Sprintall et al.(2009)Sprintall, Wijffels, and Molcard</label><mixed-citation>
Sprintall, J., Wijffels, S. E., and Molcard, R.: Direct estimates of the Indonesian throughflow entering the Indian Ocean: 2004–2006, J. Geophys. Res., 114, 1–58, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx42"><label>Stacke and Hagemann(2012)</label><mixed-citation>Stacke, T. and Hagemann, S.: Development and evaluation of a global dynamical wetlands extent scheme, Hydrol. Earth Syst. Sci., 16, 2915–2933,
doi:<ext-link xlink:href="http://dx.doi.org/10.5194/hess-16-2915-2012">10.5194/hess-16-2915-2012</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx43"><label>Stansfield and Garrett(1997)</label><mixed-citation>Stansfield, K. and Garrett, C.: Implications of the salt and heat budgets of the Gulf of Thailand, J. Mar. Res., 55, 935–963,
doi:<ext-link xlink:href="http://dx.doi.org/10.1357/0022240973224184">10.1357/0022240973224184</ext-link>, 1997.</mixed-citation></ref>
      <ref id="bib1.bibx44"><label>Takeoka(1984)</label><mixed-citation>
Takeoka, H.: Fundamental concepts of exchange and transport time scales in a coastal sea, Cont. Shelf. Res., 3, 311–326, 1984.</mixed-citation></ref>
      <ref id="bib1.bibx45"><label>Valsala and Ikeda(2007)</label><mixed-citation>Valsala, V. K. and Ikeda, M.: Pathways and effects of the Indonesian throughflow water in the Indian Ocean using particle trajectory and tracers in an OGCM, J. Climate, 20, 2994–3017, available at: <uri>http://search.proquest.com/docview/222915841?accountid=105241</uri>, 2007.</mixed-citation></ref>
      <ref id="bib1.bibx46"><label>van Aken et al.(1988)van Aken, Punjanan, and Saimima</label><mixed-citation>van Aken, H. M., Punjanan, J., and Saimima, S.: Physical Aspects of the flushing of the East Indonesian Basins, Neth. J. Sea Res., 22, 315–339,
doi:<ext-link xlink:href="http://dx.doi.org/10.1016/0077-7579(88)90003-8">10.1016/0077-7579(88)90003-8</ext-link>, 1988.</mixed-citation></ref>
      <ref id="bib1.bibx47"><label>van Aken et al.(1991)van Aken, van Bennekom, Mook, and Postma</label><mixed-citation>van Aken, H. M., van Bennekom, A. J., Mook, W. G., and Postma, H.: Application of munk abyssal recipes to tracer distributions in the deep waters of the South-Banda Basin, Oceanol. Acta, 14, 151–162, available at: <uri>http://tinyurl.sfx.mpg.de/u2vb</uri>, 1991.</mixed-citation></ref>
      <ref id="bib1.bibx48"><label>van Aken et al.(2009)van Aken, Brodjonegoro, and Jaya</label><mixed-citation>van Aken, H. M., Brodjonegoro, I. S., and Jaya, I.: The deep-water
motion through the Lifamatola Passage and its contribution to the
Indonesian throughflow, Deep-Sea Res. Pt. I, 56, 1203–1216,
doi:<ext-link xlink:href="http://dx.doi.org/10.1016/j.dsr.2009.02.001">10.1016/j.dsr.2009.02.001</ext-link>, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx49"><label>Wijffels and Meyers(2004)</label><mixed-citation>Wijffels, S. E. and Meyers, G.: An intersection of oceanic waveguides: variability in the indonesian throughflow region, J. Phys. Oceanogr., 34, 1232–1253,
doi:<ext-link xlink:href="http://dx.doi.org/10.1175/1520-0485(2004)034&lt;1232:AIOOWV&gt;2.0.CO;2">10.1175/1520-0485(2004)034&lt;1232:AIOOWV&gt;2.0.CO;2</ext-link>, 2004.</mixed-citation></ref>
      <ref id="bib1.bibx50"><label>Zimmermann(1976)</label><mixed-citation>Zimmermann, J. T. F.: Mixing and flushing of tidal embayments in the western Dutch Wadden Sea Part I: Distribution of salinity and calculation of mixing time scales, Neth. J. Sea Res., 10, 149–191,
doi:<ext-link xlink:href="http://dx.doi.org/10.1016/0077-7579(76)90013-2">10.1016/0077-7579(76)90013-2</ext-link>, 1976.</mixed-citation></ref>

  </ref-list><app-group content-type="float"><app><title/>

<?xmltex \floatpos{t}?><table-wrap id="App1.Ch1.T1"><caption><p>Some geometric data about the flushing regions: their number of horizontal grid points and 3-D grid cells in the regional model, their average depth, their area and their volume.</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.850}[.850]?><oasis:tgroup cols="7">
     <oasis:colspec colnum="1" colname="col1" align="center"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:thead>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">no</oasis:entry>  
         <oasis:entry colname="col2">name of region</oasis:entry>  
         <oasis:entry colname="col3">2-D grid points</oasis:entry>  
         <oasis:entry colname="col4">3-D grid cells</oasis:entry>  
         <oasis:entry colname="col5">avr depth [<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula>]</oasis:entry>  
         <oasis:entry colname="col6">area [<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>]</oasis:entry>  
         <oasis:entry colname="col7">volume [<inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">km</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>]</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">1</oasis:entry>  
         <oasis:entry colname="col2">Sunda Shelf</oasis:entry>  
         <oasis:entry colname="col3">15 396</oasis:entry>  
         <oasis:entry colname="col4">89 063</oasis:entry>  
         <oasis:entry colname="col5">48.8</oasis:entry>  
         <oasis:entry colname="col6">1 893 307</oasis:entry>  
         <oasis:entry colname="col7">92 374</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">2</oasis:entry>  
         <oasis:entry colname="col2">Gulf of Thailand</oasis:entry>  
         <oasis:entry colname="col3">2587</oasis:entry>  
         <oasis:entry colname="col4">13 606</oasis:entry>  
         <oasis:entry colname="col5">41.7</oasis:entry>  
         <oasis:entry colname="col6">315 437</oasis:entry>  
         <oasis:entry colname="col7">13 161</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">3</oasis:entry>  
         <oasis:entry colname="col2">Malacca Strait</oasis:entry>  
         <oasis:entry colname="col3">1131</oasis:entry>  
         <oasis:entry colname="col4">6726</oasis:entry>  
         <oasis:entry colname="col5">50.6</oasis:entry>  
         <oasis:entry colname="col6">139 330</oasis:entry>  
         <oasis:entry colname="col7">7052</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">4</oasis:entry>  
         <oasis:entry colname="col2">South China Sea<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3">7652</oasis:entry>  
         <oasis:entry colname="col4">48 454</oasis:entry>  
         <oasis:entry colname="col5">55.4</oasis:entry>  
         <oasis:entry colname="col6">942 625</oasis:entry>  
         <oasis:entry colname="col7">52 173</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">5</oasis:entry>  
         <oasis:entry colname="col2">Karimata Strait</oasis:entry>  
         <oasis:entry colname="col3">1806</oasis:entry>  
         <oasis:entry colname="col4">7609</oasis:entry>  
         <oasis:entry colname="col5">31.2</oasis:entry>  
         <oasis:entry colname="col6">223 234</oasis:entry>  
         <oasis:entry colname="col7">6970</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">6</oasis:entry>  
         <oasis:entry colname="col2">Java Sea</oasis:entry>  
         <oasis:entry colname="col3">3543</oasis:entry>  
         <oasis:entry colname="col4">17 907</oasis:entry>  
         <oasis:entry colname="col5">40.3</oasis:entry>  
         <oasis:entry colname="col6">436 274</oasis:entry>  
         <oasis:entry colname="col7">17 576</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table><?xmltex \begin{scaleboxenv}{.85}[.85]?><table-wrap-foot><p><?xmltex \hack{\vspace*{2mm}}?>
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula> Here, South China Sea means only the Sunda Shelf part of South China Sea. All regions are shown in Fig. <xref ref-type="fig" rid="App1.Ch1.F6"/>, upper left panel.</p></table-wrap-foot><?xmltex \end{scaleboxenv}?></table-wrap>

<?xmltex \floatpos{t}?><table-wrap id="App1.Ch1.T2"><caption><p>Percentage of particles flushed out of the regions and half life times (hlt, number of days to flush out 50 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">%</mml:mi></mml:math></inline-formula> of the particles) after a simulation period of two years with constant velocity fields of climatological February, May, August and October. Third column of each month is flushing rate <inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">τ</mml:mi></mml:math></inline-formula>.</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.75}[.75]?><oasis:tgroup cols="13">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:colspec colnum="9" colname="col9" align="right"/>
     <oasis:colspec colnum="10" colname="col10" align="right"/>
     <oasis:colspec colnum="11" colname="col11" align="right"/>
     <oasis:colspec colnum="12" colname="col12" align="right"/>
     <oasis:colspec colnum="13" colname="col13" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry namest="col2" nameend="col4" align="center">Feb </oasis:entry>  
         <oasis:entry namest="col5" nameend="col7" align="center">May </oasis:entry>  
         <oasis:entry namest="col8" nameend="col10" align="center">Aug </oasis:entry>  
         <oasis:entry namest="col11" nameend="col13" align="center">Oct </oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">name of region</oasis:entry>  
         <oasis:entry colname="col2">out</oasis:entry>  
         <oasis:entry colname="col3">hlt</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">τ</mml:mi></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5">out</oasis:entry>  
         <oasis:entry colname="col6">hlt</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">τ</mml:mi></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col8">out</oasis:entry>  
         <oasis:entry colname="col9">hlt</oasis:entry>  
         <oasis:entry colname="col10"><inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">τ</mml:mi></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col11">out</oasis:entry>  
         <oasis:entry colname="col12">hlt</oasis:entry>  
         <oasis:entry colname="col13"><inline-formula><mml:math display="inline"><mml:mi mathvariant="italic">τ</mml:mi></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">[<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">%</mml:mi></mml:math></inline-formula>]</oasis:entry>  
         <oasis:entry colname="col3">[<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">day</mml:mi></mml:math></inline-formula>]</oasis:entry>  
         <oasis:entry colname="col4">[<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">day</mml:mi></mml:math></inline-formula>]</oasis:entry>  
         <oasis:entry colname="col5">[<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">%</mml:mi></mml:math></inline-formula>]</oasis:entry>  
         <oasis:entry colname="col6">[<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">day</mml:mi></mml:math></inline-formula>]</oasis:entry>  
         <oasis:entry colname="col7">[<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">day</mml:mi></mml:math></inline-formula>]</oasis:entry>  
         <oasis:entry colname="col8">[<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">%</mml:mi></mml:math></inline-formula>]</oasis:entry>  
         <oasis:entry colname="col9">[<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">day</mml:mi></mml:math></inline-formula>]</oasis:entry>  
         <oasis:entry colname="col10">[<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">day</mml:mi></mml:math></inline-formula>]</oasis:entry>  
         <oasis:entry colname="col11">[<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">%</mml:mi></mml:math></inline-formula>]</oasis:entry>  
         <oasis:entry colname="col12">[<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">day</mml:mi></mml:math></inline-formula>]</oasis:entry>  
         <oasis:entry colname="col13">[<inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">day</mml:mi></mml:math></inline-formula>]</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">Sunda Shelf</oasis:entry>  
         <oasis:entry colname="col2">49.7</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn>730</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">46.4</oasis:entry>  
         <oasis:entry colname="col5">37.8</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn>730</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col7">61.5</oasis:entry>  
         <oasis:entry colname="col8">41.5</oasis:entry>  
         <oasis:entry colname="col9"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn>730</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col10">54.2</oasis:entry>  
         <oasis:entry colname="col11">34.5</oasis:entry>  
         <oasis:entry colname="col12"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn>730</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col13">60.3</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Gulf of Thailand</oasis:entry>  
         <oasis:entry colname="col2">17.0</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn>730</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">138.4</oasis:entry>  
         <oasis:entry colname="col5">29.3</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn>730</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col7">178.5</oasis:entry>  
         <oasis:entry colname="col8">27.9</oasis:entry>  
         <oasis:entry colname="col9"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn>730</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col10">93.8</oasis:entry>  
         <oasis:entry colname="col11">21.2</oasis:entry>  
         <oasis:entry colname="col12"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn>730</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col13">162.1</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Malacca Strait</oasis:entry>  
         <oasis:entry colname="col2">44.9</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn>730</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4">48.3</oasis:entry>  
         <oasis:entry colname="col5">49.4</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn>730</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col7">63.3</oasis:entry>  
         <oasis:entry colname="col8">38.7</oasis:entry>  
         <oasis:entry colname="col9"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn>730</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col10">70.0</oasis:entry>  
         <oasis:entry colname="col11">54.2</oasis:entry>  
         <oasis:entry colname="col12">327</oasis:entry>  
         <oasis:entry colname="col13">61.7</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">South China Sea*</oasis:entry>  
         <oasis:entry colname="col2">65.7</oasis:entry>  
         <oasis:entry colname="col3">97</oasis:entry>  
         <oasis:entry colname="col4">38.2</oasis:entry>  
         <oasis:entry colname="col5">52.2</oasis:entry>  
         <oasis:entry colname="col6">352</oasis:entry>  
         <oasis:entry colname="col7">66.2</oasis:entry>  
         <oasis:entry colname="col8">39.6</oasis:entry>  
         <oasis:entry colname="col9"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn>730</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col10">48.1</oasis:entry>  
         <oasis:entry colname="col11">44.1</oasis:entry>  
         <oasis:entry colname="col12"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn>730</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col13">57.2</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Karimata Strait</oasis:entry>  
         <oasis:entry colname="col2">77.8</oasis:entry>  
         <oasis:entry colname="col3">32</oasis:entry>  
         <oasis:entry colname="col4">30.5</oasis:entry>  
         <oasis:entry colname="col5">46.3</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn>730</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col7">41.8</oasis:entry>  
         <oasis:entry colname="col8">63.8</oasis:entry>  
         <oasis:entry colname="col9">47</oasis:entry>  
         <oasis:entry colname="col10">33.4</oasis:entry>  
         <oasis:entry colname="col11">72.5</oasis:entry>  
         <oasis:entry colname="col12">69</oasis:entry>  
         <oasis:entry colname="col13">44.3</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Java Sea</oasis:entry>  
         <oasis:entry colname="col2">68.6</oasis:entry>  
         <oasis:entry colname="col3">92</oasis:entry>  
         <oasis:entry colname="col4">56.3</oasis:entry>  
         <oasis:entry colname="col5">43.1</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math display="inline"><mml:mrow><mml:mo>&gt;</mml:mo><mml:mn>730</mml:mn></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col7">84.0</oasis:entry>  
         <oasis:entry colname="col8">62.7</oasis:entry>  
         <oasis:entry colname="col9">139</oasis:entry>  
         <oasis:entry colname="col10">62.0</oasis:entry>  
         <oasis:entry colname="col11">62.0</oasis:entry>  
         <oasis:entry colname="col12">201</oasis:entry>  
         <oasis:entry colname="col13">76.6</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table><?xmltex \begin{scaleboxenv}{.75}[.75]?><table-wrap-foot><p><?xmltex \hack{\vspace*{2mm}}?>
<inline-formula><mml:math display="inline"><mml:msup><mml:mi/><mml:mo>*</mml:mo></mml:msup></mml:math></inline-formula> Here, South China Sea means only the Sunda Shelf part of South China Sea. All regions are shown in Fig. <xref ref-type="fig" rid="App1.Ch1.F6"/>, upper left panel.</p></table-wrap-foot><?xmltex \end{scaleboxenv}?></table-wrap>

      <fig id="App1.Ch1.F1"><caption><p>Regional hydrodynamical model domain with bathymetry. Red dots: river input points; X: locations of four moorings for comparison of simulated and observed data. Isobath of 200 <inline-formula><mml:math display="inline"><mml:mi mathvariant="normal">m</mml:mi></mml:math></inline-formula> is also drawn to depict the Sunda Shelf limit. Along the upper and right axes, model grid indices are shown.</p></caption>
      <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://os.copernicus.org/preprints/12/863/2015/osd-12-863-2015-f01.jpg"/>

    </fig>

      <fig id="App1.Ch1.F2"><caption><p>Comparison of simulated (red) and measured (gray) meridional velocities in Labani Channel (Makassar) and Lombok Strait (see Fig. <xref ref-type="fig" rid="App1.Ch1.F1"/>) at different depths for 2004 to 2006. Diamonds at end of graphs show mean values.</p></caption>
      <?xmltex \igopts{width=284.527559pt}?><graphic xlink:href="https://os.copernicus.org/preprints/12/863/2015/osd-12-863-2015-f02.png"/>

    </fig>

      <fig id="App1.Ch1.F3"><caption><p>Comparison of simulated (red) and measured (gray) zonal velocities in Ombai Strait and Timor Passage (see Fig. <xref ref-type="fig" rid="App1.Ch1.F1"/>) at different depths for 2004 to 2006. Diamonds at end of graphs show mean values.</p></caption>
      <?xmltex \igopts{width=284.527559pt}?><graphic xlink:href="https://os.copernicus.org/preprints/12/863/2015/osd-12-863-2015-f03.png"/>

    </fig>

      <fig id="App1.Ch1.F4"><caption><p>Simulated and satellite observed sea surface salinity (SSS) and temperature (SST) at different positions. Satellite SSS is from SMOS for 2010 to 2012, satellite SST from MODIS Aqua and Terra for 2000 to 2012.</p></caption>
      <?xmltex \igopts{width=256.074803pt}?><graphic xlink:href="https://os.copernicus.org/preprints/12/863/2015/osd-12-863-2015-f04.png"/>

    </fig>

      <fig id="App1.Ch1.F5"><caption><p>Simulated and literature referenced averaged transports through different sections for periods 2004 to 2006 and – in brackets – 1970 to 2006 in Sverdrup (<inline-formula><mml:math display="inline"><mml:mrow><mml:mo>=</mml:mo><mml:msup><mml:mn>10</mml:mn><mml:mn mathvariant="normal">6</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>), positive is north- or eastward, negative south- or westward. Upper lines display always the simulated and lower lines the cited values.</p></caption>
      <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://os.copernicus.org/preprints/12/863/2015/osd-12-863-2015-f05.png"/>

    </fig>

      <fig id="App1.Ch1.F6"><caption><p>Flushing rates for different regions on the Sunda Shelf in days. Regions are indicated in upper left panel.</p></caption>
      <?xmltex \igopts{width=284.527559pt}?><graphic xlink:href="https://os.copernicus.org/preprints/12/863/2015/osd-12-863-2015-f06.png"/>

    </fig>

      <fig id="App1.Ch1.F7"><caption><p>Residence times as simulated by the tracer model for region Sunda Shelf for 2000 to 2012 monthly mean velocity fields of February, May, August and October.</p></caption>
      <?xmltex \igopts{width=284.527559pt}?><graphic xlink:href="https://os.copernicus.org/preprints/12/863/2015/osd-12-863-2015-f07.png"/>

    </fig>

      <fig id="App1.Ch1.F8"><caption><p>Residence times as simulated by the tracer model for three model layers of the Sunda Shelf region for 2000 to 2012 monthly mean velocity fields February and August.</p></caption>
      <?xmltex \igopts{height=341.433071pt}?><graphic xlink:href="https://os.copernicus.org/preprints/12/863/2015/osd-12-863-2015-f08.png"/>

    </fig>

    </app></app-group></back>
    </article>
