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<front>
<journal-meta>
<journal-id journal-id-type="publisher">OS</journal-id>
<journal-title-group>
<journal-title>Ocean Science</journal-title>
<abbrev-journal-title abbrev-type="publisher">OS</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Ocean Sci.</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1812-0792</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.5194/os-8-713-2012</article-id>
<title-group>
<article-title>An operational model for the West Iberian coast: products and services</article-title>
</title-group>
<contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Mateus</surname>
<given-names>M.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Riflet</surname>
<given-names>G.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Chambel</surname>
<given-names>P.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Fernandes</surname>
<given-names>L.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Fernandes</surname>
<given-names>R.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Juliano</surname>
<given-names>M.</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Campuzano</surname>
<given-names>F.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>de Pablo</surname>
<given-names>H.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Neves</surname>
<given-names>R.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
</contrib-group><aff id="aff1">
<label>1</label>
<addr-line>MARETEC, Instituto Superior Técnico, Universidade Técnica de Lisboa, Av. Rovisco Pais, 1049-001, Lisboa, Portugal</addr-line>
</aff>
<aff id="aff2">
<label>2</label>
<addr-line>HIDROMOD, Rua Rui Teles Palhinha, n°4, 1°, Leião, 2740-278 Porto Salvo, Portugal</addr-line>
</aff>
<aff id="aff3">
<label>3</label>
<addr-line>LAMTec, Laboratory of Marine Environment and Technology, University of the Azores, Praia da Vitória, Azores, Portugal</addr-line>
</aff>
<pub-date pub-type="epub">
<day>31</day>
<month>08</month>
<year>2012</year>
</pub-date>
<volume>8</volume>
<issue>4</issue>
<fpage>713</fpage>
<lpage>732</lpage>
<permissions>
<copyright-statement>Copyright: &#x000a9; 2012 M. Mateus et al.</copyright-statement>
<copyright-year>2012</copyright-year>
<license license-type="open-access">
<license-p>This work is licensed under the Creative Commons Attribution 3.0 Unported License. To view a copy of this licence, visit <ext-link ext-link-type="uri"  xlink:href="https://creativecommons.org/licenses/by/3.0/">https://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions>
<self-uri xlink:href="https://os.copernicus.org/articles/8/713/2012/os-8-713-2012.html">This article is available from https://os.copernicus.org/articles/8/713/2012/os-8-713-2012.html</self-uri>
<self-uri xlink:href="https://os.copernicus.org/articles/8/713/2012/os-8-713-2012.pdf">The full text article is available as a PDF file from https://os.copernicus.org/articles/8/713/2012/os-8-713-2012.pdf</self-uri>
<abstract>
<p>This paper presents the structure and application of a regional scale
operational modelling tool for the West Iberian coast, and discusses its
potential for products and services for both scientific and coastal
management activities. The forecasting suite includes nested hydrodynamic
models forced with up-to-date meteorological forecast data and large-scale
model results. The present status of the system and its recent upgrades are
reviewed, offering a general description of the main components of the
system: the forcing data, the circulation model, the model outputs and the
validation methodology of model results. Seasonal differences in
temperature, salinity and current velocity fields are illustrated and show
satisfactory reproduction of the top and deep layer thermodynamics. The
system provides boundary forcing for a number of local-scale model
applications via downscaling of the solution and enables potential products
and services from which civil society will benefit.</p>
</abstract>
<counts><page-count count="20"/></counts>
<funding-group>
<award-group id="gs1">
<funding-source>European Commission</funding-source>
<award-id>ASIMUTH - Applied simulations and Integrated modeling for the understanding of toxic and harmful algal blooms (261860)</award-id>
</award-group>
</funding-group>
</article-meta>
</front>
<body/>
<back>
<ref-list>
<title>References</title>
<ref id="ref1">
<label>1</label><mixed-citation publication-type="other" xlink:type="simple">Arakawa, A.: Computational design for long-term numerical integration of the equations of fluid motion: Two-dimensional incompressible flow. Part I, Journal of Computational Physics, 1, 119-143, 1966.</mixed-citation>
</ref>
<ref id="ref2">
<label>2</label><mixed-citation publication-type="other" xlink:type="simple">Balseiro, C. F., Carracedo, P., Gómez, B., Leitão, P. C., Montero, P., Naranjo, L., Penabad, E., and Pérez-Muñuzuri, V.: Tracking the Prestige oil spill: An operational experience in simulation at MeteoGalicia, Weather, 58, 452-458, 2003.</mixed-citation>
</ref>
<ref id="ref3">
<label>3</label><mixed-citation publication-type="other" xlink:type="simple">Beckmann, A., and Haidvogel, D. B.: Numerical Simulation of Flow around a Tall Isolated Seamount. Part I: Problem Formulation and Model Accuracy, Journal of Physical Oceanography, 23, 1736-1753, 1993.</mixed-citation>
</ref>
<ref id="ref4">
<label>4</label><mixed-citation publication-type="other" xlink:type="simple">Bell, M. J., Lefèbvre, M., Le Traon, P.-Y., Smith, N., and Wilmer-Becker, K.: GODAE: the global Ocean data assimilation experiment, Oceanography, 22, 14–21, 2009.</mixed-citation>
</ref>
<ref id="ref5">
<label>5</label><mixed-citation publication-type="other" xlink:type="simple">Blackford, J. C., Allen, J. I., and Gilbert, F. J.: Ecosystem dynamics at six contrasting sites: a generic modelling study, Journal of Marine Systems, 52, 191-215, DOI 10.1016/j.jmarsys.2004.02.004, 2004.</mixed-citation>
</ref>
<ref id="ref6">
<label>6</label><mixed-citation publication-type="other" xlink:type="simple">Blumberg, A. F., and Kantha, L.: Open Boundary Condition for Circulation Models, Journal of Hydraulic Engineering, 111, 237-255, 1985.</mixed-citation>
</ref>
<ref id="ref7">
<label>7</label><mixed-citation publication-type="other" xlink:type="simple">Breivik, Ø., Allen, A. A., Maisondieu, C., and Roth, J. C.: Wind-induced drift of objects at sea: The leeway field method, Applied Ocean Research, 33, 100-109, 10.1016/j.apor.2011.01.005, 2011.</mixed-citation>
</ref>
<ref id="ref8">
<label>8</label><mixed-citation publication-type="other" xlink:type="simple">Brickman, D., and Frank, T.: Modelling the dispersal and mortality of Browns bank egg and larval haddock (Melanogrammus aeglefinus), Can. J. Fish. Aquat. Sci., 57, 2519–2535, 2000.</mixed-citation>
</ref>
<ref id="ref9">
<label>9</label><mixed-citation publication-type="other" xlink:type="simple">Bryan, K.: A Numerical Method for the Study of the Circulation of the World Ocean, Journal of Computational Physics, 135 154-169, 1997.</mixed-citation>
</ref>
<ref id="ref10">
<label>10</label><mixed-citation publication-type="other" xlink:type="simple">Burchard, H.: Applied Turbulence Modelling in Marine Waters, no. 100 in Lecture Notes in Earth Sciences, Springer, 2002.</mixed-citation>
</ref>
<ref id="ref11">
<label>11</label><mixed-citation publication-type="other" xlink:type="simple">Cailleau, S., Chanut, J., Levier, B., Maraldi, C., and Reffray, G.: The new regional generation of Mercator Ocean system in the Iberian Biscay Irish (IBI) area, Mercator Quarterly Newsletter, 34, 5-15, 2010.</mixed-citation>
</ref>
<ref id="ref12">
<label>12</label><mixed-citation publication-type="other" xlink:type="simple">Canuto, V. M. V., Howard, A., Cheng, Y., and Dubovikov, M. S. M.: Ocean Turbulence. Part I: One-Point Closure Model-Momentum and Heat Vertical Diffusivities, Journal of Physical Oceanography, 31, 1413-1426, 2001.</mixed-citation>
</ref>
<ref id="ref13">
<label>13</label><mixed-citation publication-type="other" xlink:type="simple">Carracedo, P., Torres-López, S., Barreiro, M., Montero, P., Balseiro, C. F., Penabad, E., Leitao, P. C., and Pérez-Muñuzuri, V.: Improvement of pollutant drift forecast system applied to the Prestige oil spills in Galicia Coast (NW of Spain): development of an operational system, Marine Pollution Bulletin, 53, 350-360, 2006.</mixed-citation>
</ref>
<ref id="ref14">
<label>14</label><mixed-citation publication-type="other" xlink:type="simple">David, H., Moita, M. T., Laza-Martínez, A., Silva, A., Mateus, M., de Pablo, H., and Orive, E.: First bloom of &lt;i&gt;Ostreopsis cf. ovata&lt;/i&gt; in the continental Portuguese coast, Harmful Algae News 45, 2011.</mixed-citation>
</ref>
<ref id="ref15">
<label>15</label><mixed-citation publication-type="other" xlink:type="simple">Davidson, K., Miller, P. I., Wilding, T., Shutler, J., Bresnan, E., Kennington, K., and Swan, S.: A large and prolonged bloom of &lt;i&gt;Karenia mikimotoi&lt;/i&gt; in Scottish waters in 2006, Harmful Algae, 8, 349-361, 2009.</mixed-citation>
</ref>
<ref id="ref16">
<label>16</label><mixed-citation publication-type="other" xlink:type="simple">De Mey, P., and Proctor, R.: Assessing the value of GODAE products in coastal and shelf seas, Ocean Dynamics, 59, 1-2, 2009.</mixed-citation>
</ref>
<ref id="ref17">
<label>17</label><mixed-citation publication-type="other" xlink:type="simple">Delhez, E., and Deleersnijder, E.: Overshootings and spurious oscillations caused by biharmonic mixing, Ocean Modelling, 17, 183-198, 2007.</mixed-citation>
</ref>
<ref id="ref18">
<label>18</label><mixed-citation publication-type="other" xlink:type="simple">Drillet, Y.: Meddies in the Mercator North Atlantic and Mediterranean Sea eddy-resolving model, Journal of Geophysical Research, 110, 1-16, 2005.</mixed-citation>
</ref>
<ref id="ref19">
<label>19</label><mixed-citation publication-type="other" xlink:type="simple">Escalera, L., Reguera, B., Pazos, Y., Morono, A., and Cabanas, J. M.: Are different species of Dinophysis selected by climatological conditions?, Afr J Mar Sci, 28, 283-288, 2006.</mixed-citation>
</ref>
<ref id="ref20">
<label>20</label><mixed-citation publication-type="other" xlink:type="simple">Escalera, L., Reguera, B., Moita, T., Pazos, Y., Cerejo, M., Cabanas, J. M., and Ruiz-Villarreal, M.: Bloom dynamics of Dinophysis acuta in an upwelling system: In situ growth versus transport, Harmful Algae, 9, 312-322, 10.1016/j.hal.2009.12.002, 2010.</mixed-citation>
</ref>
<ref id="ref21">
<label>21</label><mixed-citation publication-type="other" xlink:type="simple">Fiuza, A. F. G., Hamann, M., Ambar, I., del Rio, G. D., Gonzalez, N., and Cabanas, J. M.: Water masses and their circulation off western Iberia during May 1993, Deep-Sea Res Pt I, 45, 1127-1160, 1998.</mixed-citation>
</ref>
<ref id="ref22">
<label>22</label><mixed-citation publication-type="other" xlink:type="simple">Flather, R. A.: A tidal model of the north-west European continental shelf, Memoires de la Societe Royale des Sciences de Liege, 6, 141-164, 1976.</mixed-citation>
</ref>
<ref id="ref23">
<label>23</label><mixed-citation publication-type="other" xlink:type="simple">Fofonoff, N. P., and Millard, R. C.: Algorithms for computation of fundamental properties of seawater, Unesco technical papers in marine science, 44, 1983.</mixed-citation>
</ref>
<ref id="ref24">
<label>24</label><mixed-citation publication-type="other" xlink:type="simple">Génio, L., Sousa, A., Vaz, N., Dias, J. M., and Barroso, C.: Effect of low salinity on the survival of recently hatched veliger of Nassarius reticulatus (L.) in estuarine habitats: A case study of Ria de Aveiro, Journal of Sea Research, 59, 133-143, 10.1016/j.seares.2007.09.001, 2008.</mixed-citation>
</ref>
<ref id="ref25">
<label>25</label><mixed-citation publication-type="other" xlink:type="simple">González, M., Ferrer, L., Uriarte, A., Urtizberea, A., and Caballero, A.: Operational Oceanography System applied to the Prestige oil-spillage event, Journal of Marine Systems, 72, 178-188, 10.1016/j.jmarsys.2007.07.005, 2008.</mixed-citation>
</ref>
<ref id="ref26">
<label>26</label><mixed-citation publication-type="other" xlink:type="simple">Holt, J. T., and James, I. D.: A simulation of the southern North Sea in comparison with measurements from the North Sea project, Part 1, Temperature, Continental Shelf Research, 19, 1087-1112, 1999.</mixed-citation>
</ref>
<ref id="ref27">
<label>27</label><mixed-citation publication-type="other" xlink:type="simple">Huggett, J., Fréon, P., Mullon, C., and Penven, P.: Modelling the transport success of anchovy Engraulis encrasicolus eggs and larvae in the southern Benguela: the effect of spatio-temporal spawning patterns, Mar. Ecol. Prog. Ser., 250, 247–262, 2003.</mixed-citation>
</ref>
<ref id="ref28">
<label>28</label><mixed-citation publication-type="other" xlink:type="simple">INE: Estatísticas da Pesca 2010, Instituto Nacional de Estatística, Lisboa, Portugal, 101, 2011.</mixed-citation>
</ref>
<ref id="ref29">
<label>29</label><mixed-citation publication-type="other" xlink:type="simple">Kordzadze, A. A. and Demetrashvili, D. I.: Operational forecast of hydrophysical fields in the Georgian Black Sea coastal zone within the ECOOP, Ocean Sci., 7, 793–803, &lt;a href=&quot;http://dx.doi.org/10.5194/os-7-793-2011&quot;&gt;https://doi.org/10.5194/os-7-793-2011&lt;/a&gt;, 2011.</mixed-citation>
</ref>
<ref id="ref30">
<label>30</label><mixed-citation publication-type="other" xlink:type="simple">Korotaev, G. K., Oguz, T., Dorofeyev, V. L., Demyshev, S. G., Kubryakov, A. I., and Ratner, Yu. B.: Development of Black Sea nowcasting and forecasting system, Ocean Sci., 7, 629–649, &lt;a href=&quot;http://dx.doi.org/10.5194/os-7-629-2011&quot;&gt;https://doi.org/10.5194/os-7-629-2011&lt;/a&gt;, 2011.</mixed-citation>
</ref>
<ref id="ref31">
<label>31</label><mixed-citation publication-type="other" xlink:type="simple">Le Traon, P.-Y., Larnicol, G., Guinehut, S., Pouliquen, S., Bentamy, A., Roemmich, D., Donlon, C., Roquet, H., Jacobs, G., Griffin, D., Bonjean, F., Hoepffner, N., and Breivik, L. A.: Data assembly and processing for operational oceanography: 10 years of achievements, Oceanography, 22, 56–69, &lt;a href=&quot;http://dx.doi.org/10.5670/oceanog.2009.66.&quot;&gt;https://doi.org/10.5670/oceanog.2009.66.&lt;/a&gt;, 2009.</mixed-citation>
</ref>
<ref id="ref32">
<label>32</label><mixed-citation publication-type="other" xlink:type="simple">Leendertse, J. J.: Aspects of a Computational Model for Long-period Water-wave Propagation, Rand Corporation for the United States Air Force Project Rand, 1967.</mixed-citation>
</ref>
<ref id="ref33">
<label>33</label><mixed-citation publication-type="other" xlink:type="simple">Lefèvre, F., Lyard, F. H., Le Provost, C., and Schrama, E. J. O.: FES99: A Global Tide Finite Element Solution Assimilating Tide Gauge and Altimetric Information, J. Atmos. Ocean. Tech., 19, 1345–1356, &lt;a href=&quot;http://dx.doi.org/10.1175/1520-0426(2002)019&lt;1345:fagtfe&gt;2.0.co;2&quot;&gt;https://doi.org/10.1175/1520-0426(2002)019&lt;1345:fagtfe&gt;2.0.co;2&lt;/a&gt;, 2002.</mixed-citation>
</ref>
<ref id="ref34">
<label>34</label><mixed-citation publication-type="other" xlink:type="simple">Leitão, P., Coelho, H., Santos, A., and Neves, R.: Modelling the main features of the Algarve coastal circulation during July 2004: A downscaling approach, J. Atmos. Ocean Sci., 10, 421–462, 2005.</mixed-citation>
</ref>
<ref id="ref35">
<label>35</label><mixed-citation publication-type="other" xlink:type="simple">Lyard, F., Lefevre, F., Letellier, T., and Francis, O.: Modelling the global ocean tides: modern insights from FES2004, Ocean Dynam., 56, 394–415, &lt;a href=&quot;http://dx.doi.org/10.1007/s10236-006-0086-x&quot;&gt;https://doi.org/10.1007/s10236-006-0086-x&lt;/a&gt;, 2006.</mixed-citation>
</ref>
<ref id="ref36">
<label>36</label><mixed-citation publication-type="other" xlink:type="simple">Martins, F., Neves, R., and Leitão, P. C.: A three-dimensional hydrodynamic model with generic vertical coordinate, Hydroinformatics, 98, 1403–1410, 1998.</mixed-citation>
</ref>
<ref id="ref37">
<label>37</label><mixed-citation publication-type="other" xlink:type="simple">Martins, F., Leitão, P., Silva, A., and Neves, R.: 3D modelling in the Sado estuary using a new generic vertical discretization approach, Ocean. Ac., 24, S51–S62, 2001.</mixed-citation>
</ref>
<ref id="ref38">
<label>38</label><mixed-citation publication-type="other" xlink:type="simple">Martinsen, E. A. and Engedahl, H.: Implementation and testing of a lateral boundary scheme as an open boundary condition in a barotropic ocean model, Coast. Eng., 11, 603–627, 1987.</mixed-citation>
</ref>
<ref id="ref39">
<label>39</label><mixed-citation publication-type="other" xlink:type="simple">Mateus, M.: A process-oriented model of pelagic biogeochemistry for marine systems. Part I: Model description, J. Mar. Syst., 94, S78–S89, &lt;a href=&quot;http://dx.doi.org/10.1016/j.jmarsys.2011.11.008&quot;&gt;https://doi.org/10.1016/j.jmarsys.2011.11.008&lt;/a&gt;, 2012.</mixed-citation>
</ref>
<ref id="ref40">
<label>40</label><mixed-citation publication-type="other" xlink:type="simple">Mateus, M., Leitão, P. C., de Pablo, H., and Neves, R.: Is it relevant to explicitly parameterize chlorophyll synthesis in marine ecological models?, J. Mar. Syst., 94, S23–S33, &lt;a href=&quot;http://dx.doi.org/10.1016/j.jmarsys.2011.11.007&quot;&gt;https://doi.org/10.1016/j.jmarsys.2011.11.007&lt;/a&gt;, 2012.</mixed-citation>
</ref>
<ref id="ref41">
<label>41</label><mixed-citation publication-type="other" xlink:type="simple">Methot Jr., R. D.: Stock Assessment: Operational Models in Support of Fisheries Management, in: The Future of Fisheries Science in North America, edited by: Beamish, R. J. and Rothschild, B. J., Fish Fish. Ser., Springer Science + Business Media B.V., 137–165, 2009.</mixed-citation>
</ref>
<ref id="ref42">
<label>42</label><mixed-citation publication-type="other" xlink:type="simple">Moita, M. T., Oliveira, P. B., Mendes, J. C., and Palma, A. S.: Distribution of chlorophyll a and Gymnodinium catenatum associated with coastal upwelling plumes off central Portugal, Acta. Oecologia, 24, 125–132, 2003.</mixed-citation>
</ref>
<ref id="ref43">
<label>43</label><mixed-citation publication-type="other" xlink:type="simple">Moita, M. T., Sobrinho-Goncalves, L., Oliveira, P. B., Palma, S., and Falcao, M.: A bloom of Dinophysis acuta in a thin layer off north-west Portugal, Afr. J. Mar. Sci., 28, 265–269, 2006.</mixed-citation>
</ref>
<ref id="ref44">
<label>44</label><mixed-citation publication-type="other" xlink:type="simple">Navas, J. M., Telfer, T. C., and Ross, L. G.: Application of 3D hydrodynamic and particle tracking models for better environmental management of finfish culture, Cont. Shelf Res., 31, 675–684, &lt;a href=&quot;http://dx.doi.org/10.1016/j.csr.2011.01.001&quot;&gt;https://doi.org/10.1016/j.csr.2011.01.001&lt;/a&gt;, 2011.</mixed-citation>
</ref>
<ref id="ref45">
<label>45</label><mixed-citation publication-type="other" xlink:type="simple">Oddo, P. and Guarnieri, A.: A study of the hydrographic conditions in the Adriatic Sea from numerical modelling and direct observations (2000–2008), Ocean Sci., 7, 549–567, &lt;a href=&quot;http://dx.doi.org/10.5194/os-7-549-2011&quot;&gt;https://doi.org/10.5194/os-7-549-2011&lt;/a&gt;, 2011.</mixed-citation>
</ref>
<ref id="ref46">
<label>46</label><mixed-citation publication-type="other" xlink:type="simple">Oliveira, P. B., Nolasco, R., Dubert, J., Moita, T., and Peliz, A.: Surface temperature, chlorophyll and advection patterns during a summer upwelling event off central Portugal, Cont. Shelf Res., 29, 759–774, &lt;a href=&quot;http://dx.doi.org/10.1016/j.csr.2008.08.004&quot;&gt;https://doi.org/10.1016/j.csr.2008.08.004&lt;/a&gt;, 2009.</mixed-citation>
</ref>
<ref id="ref47">
<label>47</label><mixed-citation publication-type="other" xlink:type="simple">Palma, S., Mouriño, H., Silva, A., Barão, M. I., and Moita, M. T.: Can Pseudo-nitzschia blooms be modeled by coastal upwelling in Lisbon Bay?, Harmful Algae, 9, 294–303, &lt;a href=&quot;http://dx.doi.org/10.1016/j.hal.2009.11.006&quot;&gt;https://doi.org/10.1016/j.hal.2009.11.006&lt;/a&gt;, 2010.</mixed-citation>
</ref>
<ref id="ref48">
<label>48</label><mixed-citation publication-type="other" xlink:type="simple">Peliz, A., Rosa, T. L., Santos, A. M. P., and Pissarra, J. L.: Fronts, jets, and counter-flows in the Western Iberian upwelling system, J. Mar. Syst., 35, 61–77, 2002.</mixed-citation>
</ref>
<ref id="ref49">
<label>49</label><mixed-citation publication-type="other" xlink:type="simple">Peliz, A., Dubert, J., Santos, A. M. P., Oliveira, P. B., and Le Cann, B.: Winter upper ocean circulation in the Western Iberian Basin – Fronts, Eddies and Poleward Flows: an overview, Deep-Sea Res Pt.&amp;nbsp;I, 52, 621–646, &lt;a href=&quot;http://dx.doi.org/10.1016/j.dsar.2004.11.005&quot;&gt;https://doi.org/10.1016/j.dsar.2004.11.005&lt;/a&gt;, 2005.</mixed-citation>
</ref>
<ref id="ref50">
<label>50</label><mixed-citation publication-type="other" xlink:type="simple">Perivoliotis, L., Krokos, G., Nittis, K., and Korres, G.: The Aegean sea marine security decision support system, Ocean Sci., 7, 671–683, &lt;a href=&quot;http://dx.doi.org/10.5194/os-7-671-2011&quot;&gt;https://doi.org/10.5194/os-7-671-2011&lt;/a&gt;, 2011.</mixed-citation>
</ref>
<ref id="ref51">
<label>51</label><mixed-citation publication-type="other" xlink:type="simple">Riflet, G., Juliano, M., Fernandes, L. L., Leitão, P. C., and Neves, R.: Operational Ocean forecasting of the Portuguese waters, Mercator Quarterly Newsletter, 30, 20–32, 2008.</mixed-citation>
</ref>
<ref id="ref52">
<label>52</label><mixed-citation publication-type="other" xlink:type="simple">Robinson, L. A. and Frid, C. L. J.: Dynamic ecosystem models and the evaluation of ecosystem effects of fishing: can we make meaningful predictions?, Aquat. Conserv., 13, 5–20, &lt;a href=&quot;http://dx.doi.org/10.1002/Aqc.506&quot;&gt;https://doi.org/10.1002/Aqc.506&lt;/a&gt;, 2003.</mixed-citation>
</ref>
<ref id="ref53">
<label>53</label><mixed-citation publication-type="other" xlink:type="simple">Ruiz-Villarreal, M., Bolding, K., Burchard, H., and Demirov, E.: Coupling of the GOTM turbulence module to some three-dimensional ocean models, in: Marine Turbulence: Theories, Observations, and Models. Results of the CARTUM Project, edited by: Baumert, H. Z., Simpson, J. H., and Sundermann, J., Cambridge University Press, 225–237, 2005.</mixed-citation>
</ref>
<ref id="ref54">
<label>54</label><mixed-citation publication-type="other" xlink:type="simple">Santoro, P., Fernandez, M., Fossati, M., Cazes, G., Terra, R., and Piedra-Cueva, I.: Pre-operational forecasting of sea level height for the Rio de la Plata, Appl. Math. Model, 35, 2462–2478, &lt;a href=&quot;http://dx.doi.org/10.1016/j.apm.2010.11.065&quot;&gt;https://doi.org/10.1016/j.apm.2010.11.065&lt;/a&gt;, 2011.</mixed-citation>
</ref>
<ref id="ref55">
<label>55</label><mixed-citation publication-type="other" xlink:type="simple">Santos, A. J. P., Nogueira, J., and Martins, H.: Survival of sardine larvae off the Atlantic Portuguese coast: a preliminary numerical study, Ices J. Mar. Sci., 62, 634–644, &lt;a href=&quot;http://dx.doi.org/10.1016/j.icesjms.2005.02.007&quot;&gt;https://doi.org/10.1016/j.icesjms.2005.02.007&lt;/a&gt;, 2005.</mixed-citation>
</ref>
<ref id="ref56">
<label>56</label><mixed-citation publication-type="other" xlink:type="simple">Siddorn, J. R., Allen, J. I., Blackford, J. C., Gilbert, F. J., Holt, J. T., Holt, M. W., Osborne, J. P., Proctor, R., and Mills, D. K.: Modelling the hydrodynamics and ecosystem of the North-West European continental shelf for operational oceanography, J. Mar. Syst., 65, 417–429, &lt;a href=&quot;http://dx.doi.org/10.1016/j.jmarsys.2006.01.018&quot;&gt;https://doi.org/10.1016/j.jmarsys.2006.01.018&lt;/a&gt;, 2007.</mixed-citation>
</ref>
<ref id="ref57">
<label>57</label><mixed-citation publication-type="other" xlink:type="simple">Silke, J., O&apos;Beirn, F., and Cronin, M.: Karenia: an exceptional dinoflagellate bloom in western Irish waters, summer 2005, Marine Institute, Galway, Ireland, 44, 2005.</mixed-citation>
</ref>
<ref id="ref58">
<label>58</label><mixed-citation publication-type="other" xlink:type="simple">Sousa, T.: Previsão Meteorológica em Portugal Continental utilizando o modelo operacional e de investigação MM5, Instituto Superior Técnico, Lisbon Technical University, 2002.</mixed-citation>
</ref>
<ref id="ref59">
<label>59</label><mixed-citation publication-type="other" xlink:type="simple">Stanev, E. V., Schulz-Stellenfleth, J., Staneva, J., Grayek, S., Seemann, J., and Petersen, W.: Coastal observing and forecasting system for the German Bight – estimates of hydrophysical states, Ocean Sci., 7, 569–583, &lt;a href=&quot;http://dx.doi.org/10.5194/os-7-569-2011&quot;&gt;https://doi.org/10.5194/os-7-569-2011&lt;/a&gt;, 2011.</mixed-citation>
</ref>
<ref id="ref60">
<label>60</label><mixed-citation publication-type="other" xlink:type="simple">Stumpf, R. P., Tomlinson, M. C., Calkins, J. A., Kirkpatrick, B., Fisher, K., Nierenberg, K., Currier, R., and Wynne, T. T.: Skill assessment for an operational algal bloom forecast system, J. Mar. Syst., 76, 151–161, &lt;a href=&quot;http://dx.doi.org/10.1016/j.jmarsys.2008.05.016&quot;&gt;https://doi.org/10.1016/j.jmarsys.2008.05.016&lt;/a&gt;, 2009.</mixed-citation>
</ref>
<ref id="ref61">
<label>61</label><mixed-citation publication-type="other" xlink:type="simple">Trainer, V. L., Pitcher, G. C., Reguera, B., and Smayda, T. J.: The distribution and impacts of harmful algal bloom species in eastern boundary upwelling systems, Prog. Oceanogr., 85, 33–52, &lt;a href=&quot;http://dx.doi.org/10.1016/j.pocean.2010.02.003&quot;&gt;https://doi.org/10.1016/j.pocean.2010.02.003&lt;/a&gt;, 2010.</mixed-citation>
</ref>
<ref id="ref62">
<label>62</label><mixed-citation publication-type="other" xlink:type="simple">Vale, P.: Two simple models for accounting mussel contamination with diarrhoetic shellfish poisoning toxins at Aveiro lagoon: Control by rainfall and atmospheric forcing, Estuarine, Coast. Shelf Sci., 98, 94–100, &lt;a href=&quot;http://dx.doi.org/10.1016/j.ecss.2011.12.007&quot;&gt;https://doi.org/10.1016/j.ecss.2011.12.007&lt;/a&gt;, 2012.</mixed-citation>
</ref>
<ref id="ref63">
<label>63</label><mixed-citation publication-type="other" xlink:type="simple">Varela, M., Álvarez-Ossorio, M. T., Bode, A., Prego, R., Bernárdez, P., and Garcia-Soto, C.: The effects of a winter upwelling on biogeochemical and planktonic components in an area close to the Galician Upwelling Core: The Sound of Corcubión (NW Spain), J. Sea Res., 64, 260–272, &lt;a href=&quot;http://dx.doi.org/10.1016/j.seares.2010.03.004&quot;&gt;https://doi.org/10.1016/j.seares.2010.03.004&lt;/a&gt;, 2010.</mixed-citation>
</ref>
<ref id="ref64">
<label>64</label><mixed-citation publication-type="other" xlink:type="simple">Velo-Suárez, L., Reguera, B., González-Gil, S., Lunven, M., Lazure, P., Nézan, E., and Gentien, P.: Application of a 3D Lagrangian model to explain the decline of a &lt;i&gt;Dinophysis acuminata&lt;/i&gt; bloom in the Bay of Biscay, J. Mar. Syst., 83, 242–252, 2010.</mixed-citation>
</ref>
<ref id="ref65">
<label>65</label><mixed-citation publication-type="other" xlink:type="simple">Wynne, T. T., Stumpf, R. P., Tomlinson, M. C., Schwab, D. J., Watabayashi, G. Y., and Christensen, J. D.: Estimating cyanobacterial bloom transport by coupling remotely sensed imagery and a hydrodynamic model, Ecol. Appl., 21, 2709–2721, 2011.</mixed-citation>
</ref>
<ref id="ref66">
<label>66</label><mixed-citation publication-type="other" xlink:type="simple">Zalesny, V. B. and Tamsalu, R.: High-resolution modeling of a marine ecosystem using the FRESCO hydroecological model. Izvestiya, Atmos. Ocean. Phys., 45, 108–122, 2009.</mixed-citation>
</ref>
<ref id="ref67">
<label>67</label><mixed-citation publication-type="other" xlink:type="simple">Zhuang, S. Y., Fu, W. W., and She, J.: A pre-operational three Dimensional variational data assimilation system in the North/Baltic Sea, Ocean Sci., 7, 771–781, &lt;a href=&quot;http://dx.doi.org/10.5194/os-7-771-2011&quot;&gt;https://doi.org/10.5194/os-7-771-2011&lt;/a&gt;, 2011.</mixed-citation>
</ref>
</ref-list>
</back>
</article>