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<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" xml:lang="en" dtd-version="3.0" article-type="research-article">
  <front>
    <journal-meta><journal-id journal-id-type="publisher">OS</journal-id><journal-title-group>
    <journal-title>Ocean Science</journal-title>
    <abbrev-journal-title abbrev-type="publisher">OS</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Ocean Sci.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1812-0792</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/os-17-953-2021</article-id><title-group><article-title>Seasonal variation of the sound-scattering zooplankton vertical distribution in the oxygen-deficient waters of the NE Black Sea</article-title><alt-title>Seasonal variation of the sound-scattering zooplankton vertical distribution</alt-title>
      </title-group><?xmltex \runningtitle{Seasonal variation of the sound-scattering zooplankton vertical distribution}?><?xmltex \runningauthor{A.~G.~Ostrovskii~et~al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes">
          <name><surname>Ostrovskii</surname><given-names>Alexander G.</given-names></name>
          <email>osasha@ocean.ru</email>
        <ext-link>https://orcid.org/0000-0002-5906-0361</ext-link></contrib>
        <contrib contrib-type="author" corresp="no">
          <name><surname>Arashkevich</surname><given-names>Elena G.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name><surname>Solovyev</surname><given-names>Vladimir A.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name><surname>Shvoev</surname><given-names>Dmitry A.</given-names></name>
          
        </contrib>
        <aff id="aff1"><institution>Shirshov Institute of Oceanology, Russian Academy of Sciences, 36, Nakhimovsky prospekt, Moscow, 117997, Russia</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Alexander G. Ostrovskii (osasha@ocean.ru)</corresp></author-notes><pub-date><day>23</day><month>July</month><year>2021</year></pub-date>
      
      <volume>17</volume>
      <issue>4</issue>
      <fpage>953</fpage><lpage>974</lpage>
      <history>
        <date date-type="received"><day>10</day><month>November</month><year>2020</year></date>
           <date date-type="accepted"><day>23</day><month>June</month><year>2021</year></date>
           <date date-type="rev-recd"><day>22</day><month>June</month><year>2021</year></date>
           <date date-type="rev-request"><day>8</day><month>December</month><year>2020</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2021 </copyright-statement>
        <copyright-year>2021</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://os.copernicus.org/articles/.html">This article is available from https://os.copernicus.org/articles/.html</self-uri><self-uri xlink:href="https://os.copernicus.org/articles/.pdf">The full text article is available as a PDF file from https://os.copernicus.org/articles/.pdf</self-uri>
      <abstract><title>Abstract</title>
    <p id="d1e105">At the northeastern Black Sea research site, observations from 2010–2020 allowed us to study the dynamics and evolution of the vertical
distribution of mesozooplankton in oxygen-deficient conditions via analysis of sound-scattering layers associated with dominant zooplankton
aggregations. The data were obtained with profiler mooring and zooplankton net sampling. The profiler was equipped with an acoustic Doppler current
meter, a conductivity–temperature–depth probe, and fast sensors for the concentration of dissolved oxygen [<inline-formula><mml:math id="M1" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>]. The acoustic instrument
conducted ultrasound (2 <inline-formula><mml:math id="M2" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">MHz</mml:mi></mml:mrow></mml:math></inline-formula>) backscatter measurements at three angles while being carried by the profiler through the oxic zone. For the lower
part of the oxycline and the hypoxic zone, the normalized data of three acoustic beams (directional acoustic backscatter ratios, <inline-formula><mml:math id="M3" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula>) indicated
sound-scattering mesozooplankton aggregations, which were defined by zooplankton taxonomic and quantitative characteristics based on stratified net
sampling at the mooring site. The time series of <inline-formula><mml:math id="M4" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 14 000 <inline-formula><mml:math id="M5" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> profiles as a function of [<inline-formula><mml:math id="M6" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] at depths where
[<inline-formula><mml:math id="M7" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] <inline-formula><mml:math id="M8" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 200 <inline-formula><mml:math id="M9" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> were analyzed to determine month-to-month variations of the sound-scattering layers. From spring to early
autumn, there were two sound-scattering maxima corresponding to (1) daytime aggregations, mainly formed by diel-vertical-migrating copepods
<italic>Calanus euxinus</italic> and <italic>Pseudocalanus elongatus</italic> and chaetognaths <italic>Parasagitta setosa</italic>, usually at
[<inline-formula><mml:math id="M10" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] <inline-formula><mml:math id="M11" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 15–100 <inline-formula><mml:math id="M12" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>, and (2) a persistent monospecific layer of the diapausing fifth copepodite stages of <italic>C. euxinus</italic> in
the suboxic zone at 3 <inline-formula><mml:math id="M13" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M14" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> [<inline-formula><mml:math id="M15" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] <inline-formula><mml:math id="M16" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 10 <inline-formula><mml:math id="M17" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>. From late autumn to early winter, no persistent deep
sound-scattering layer was observed. At the end of winter, the acoustic backscatter was basically uniform in the lower part of the oxycline and the
hypoxic zone. The assessment of the seasonal variability of the sound-scattering mesozooplankton layers is important for understanding
biogeochemical processes in oxygen-deficient waters.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d1e284">The main distinguishing feature of the Black Sea environment is its oxygen stratification with an oxygenated upper layer 80–200 <inline-formula><mml:math id="M18" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> thick and
the underlying waters containing hydrogen sulfide (Andrusov, 1890; see also review by Oguz et al., 2006). Early studies of the oxic zone indicated
that the vertical distribution of zooplankton hinges on oxygen stratification (Nikitin, 1926; Petipa et al., 1960). Later, the dives of the manned
research submersible <italic>Argus</italic> showed that the zooplankton vertical distribution was not uniform (Vinogradov et al. 1985; Flint 1989). In particular, the
thin-layered structure of zooplankton distribution was observed by the <italic>Argus</italic> research pilot in the lower part of the oxic zone. Thereafter,
zooplankton sampling with a vertical resolution of 3–5 <inline-formula><mml:math id="M19" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> using a 150 <inline-formula><mml:math id="M20" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">L</mml:mi></mml:mrow></mml:math></inline-formula> sampler with an attached
conductivity–temperature–depth (CTD) probe indicated that the daytime deep aggregations of the zooplankton populations were associated with layers of
certain water density (Vinogradov and Nalbandov, 1990; Vinogradov et al., 1992). The deeper zooplankton aggregation was formed by the fifth copepodite
stage of <italic>Calanus ponticus</italic> (former name of <italic>C. euxinus</italic>), and its lower boundary was at the specific density surface
<inline-formula><mml:math id="M21" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M22" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 15.9, where the oxygen concentration was approximately 4 <inline-formula><mml:math id="M23" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>. The diapausing cohort of <italic>C. ponticus</italic> did not
perform vertical migrations and occupied the suboxic layer around the clock (Vinogradov et al., 1992). The accumulation of a high lipid reserve, a
decrease in the rate of oxygen consumption, and a delay in gonad development<?pagebreak page954?> were defined as characteristic features of diapausing <italic>C. euxinus</italic>
(Vinogradov et al., 1992; Arashkevich et al., 1998; Svetlichny et al., 2002, 2006). The vertically migrating zooplankters (ctenophores
<italic>Pleurobrachia pileus</italic>, chaetognaths <italic>Parasagitta setosa</italic>, and older copepodites of <italic>Pseudocalanus elongatus</italic> and
<italic>C. euxinus</italic>) formed daytime aggregations between isopycnals 15.7–15.5 and 15.4–14.9 and at an oxygen concentration of 11–40 <inline-formula><mml:math id="M24" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>.
At night, the migrant zooplankters inhabited the upper layers and peaked in the thermocline (Vinogradov et al., 1985). The descent of zooplankters
into the hypoxic zone during the daytime may give an energetic advantage to migrating specimens due to a decrease in the rate of oxygen consumption
and locomotor activity at low oxygen concentrations, as has been shown for females of <italic>C. euxinus</italic> (Svetlichny et al., 2000). This and other
experimental studies contributed to the development of an optimal behavioral strategy model (Morozov et al., 2019) for structured populations of two
species, <italic>C. euxinus</italic> and <italic>P. elongatus</italic>. The authors parameterized the model using seasonal field observations in the NE Black Sea and
showed that the diel vertical migrations of these species could be explained as the result of a trade-off between depth-dependent metabolic costs,
anoxia, available food, and predation.</p>
      <p id="d1e391">Zooplankton aggregations result in sound-scattering layers (SSLs). Diel vertical migration was observed using ship echo sounding at frequencies of
120–200 <inline-formula><mml:math id="M25" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">kHz</mml:mi></mml:mrow></mml:math></inline-formula> (Erkan and Gücü, 1998; Mutlu, 2003, 2006, 2007; Stefanova and Marinova, 2015). The diurnal dynamics of
<italic>C. euxinus</italic> and chaetognaths were documented from shipborne echograms (Mutlu 2003, 2006). The lower boundary of the migrating
<italic>C. euxinus</italic> was defined as <inline-formula><mml:math id="M26" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M27" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 16.15–16.2 for the daytime, and the migrating chaetognaths were defined as
<inline-formula><mml:math id="M28" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M29" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 15.9–16.0 (Mutlu 2007). In July 2013, a multifrequency (38, 120, and 200 <inline-formula><mml:math id="M30" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">kHz</mml:mi></mml:mrow></mml:math></inline-formula>) shipborne echo-sounder survey over the
southern Black Sea revealed that the daytime deep distribution of migrating <italic>C. euxinus</italic> was bounded by <inline-formula><mml:math id="M31" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> values between 15.2
and 15.9 (Sakınan and Gücü, 2016). In the above studies, the persistent layer of diapausing <italic>C. euxinus</italic> was not detected in the
echograms.</p>
      <p id="d1e470">The 24 <inline-formula><mml:math id="M32" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula> rhythm in the pattern of sound scattering was a prominent feature of the 2 <inline-formula><mml:math id="M33" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">MHz</mml:mi></mml:mrow></mml:math></inline-formula> acoustic sensing data obtained by a moored
profiler station (Ostrovskii and Zatsepin, 2011) in the NE Black Sea. The data obtained by a short (up to 10 <inline-formula><mml:math id="M34" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">d</mml:mi></mml:mrow></mml:math></inline-formula>) experimental deployment of a
moored automatic mobile profiler, equipped with an ultrasound probe operating at a frequency of 2 <inline-formula><mml:math id="M35" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">MHz</mml:mi></mml:mrow></mml:math></inline-formula> and a dissolved oxygen sensor, allowed
Ostrovskii and Zatsepin (2011) to define the main sound-scattering zones as follows:
<list list-type="bullet"><list-item>
      <p id="d1e507">the hydrogen sulfide zone below the specific density surface <inline-formula><mml:math id="M36" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M37" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 15.9–16.0 (Yakushev et al., 2005), where sound is
scattered by sedimented detritus and mineral particles, whose fluxes vary temporally while being rather homogeneous at different depths;</p></list-item><list-item>
      <p id="d1e529">above the hydrogen sulfide zone in the suboxic layer (where the concentration of dissolved oxygen [<inline-formula><mml:math id="M38" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] <inline-formula><mml:math id="M39" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 10 <inline-formula><mml:math id="M40" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> (Murray
et al., 1989, Oguz et al., 2006) and above that, in the oxycline ([<inline-formula><mml:math id="M41" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] increases from 10 to 280–300 <inline-formula><mml:math id="M42" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> with
decreasing depth), where sound scattering occurs from both suspended particles and mesozooplankton with characteristic sizes from
200 <inline-formula><mml:math id="M43" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> to 20 <inline-formula><mml:math id="M44" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>;</p></list-item><list-item>
      <p id="d1e601">above the oxycline in the oxygen-rich euphotic zone, where large-cell phytoplankton (Yunev et al., 2020) become an additional sound-scattering
agent.</p></list-item></list></p>
      <p id="d1e604">Using a combination of ultrasound sensing and stratified zooplankton sampling was necessary to resolve the ocean fine-scale vertical distribution of
mesozooplankton. An analysis of both echograms and simultaneous stratified net sampling showed that the SSLs at 2 <inline-formula><mml:math id="M45" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">MHz</mml:mi></mml:mrow></mml:math></inline-formula> were associated with the
zooplankton species <italic>C. euxinus</italic> and <italic>P. elongatus</italic> at <inline-formula><mml:math id="M46" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M47" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 15.7–15.4 and diapausing <italic>C. euxinus</italic> above
<inline-formula><mml:math id="M48" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M49" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 15.9 (Arashkevich et al., 2013).</p>
      <p id="d1e662">The specific theme of this study is the seasonal change in the sound-scattering zooplankton vertical distribution across the oxygen gradient from the
lower part of oxygenated water to the anoxic zone boundary. This theme is in line with the EU Horizon 2020 BRIDGE-BS project
(<uri>https://cordis.europa.eu/project/id/101000240</uri>, last access: 19 July 2021), which focuses on Black Sea ecosystem functioning. While
the project relies on future observations and methods for understanding biogeochemical processes at several pilot sites, this paper presents ongoing
observations at the northeastern Black Sea Gelendzhik site. The acoustic data were collected year-round and analyzed to infer the SSL seasonal
variability in relation to the oxygen stratification. Our observational study was made possible using a moored Aqualog profiler, equipped with an
ultrasound probe, a CTD probe, and a fast oxygen sensor. The advantage of this approach is that it provides frequent year-round measurements (with an
interval of up to 1 <inline-formula><mml:math id="M50" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula>) of collocated vertical profiles of sound scattering, temperature, salinity, and dissolved oxygen concentration in the
water column from the near surface to the bottom layer with a high vertical resolution (up to 20 <inline-formula><mml:math id="M51" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi></mml:mrow></mml:math></inline-formula>). This helps to fill in the gaps due to
insufficient zooplankton sampling in the winter season and resolves difficulties with sampling at precise depths, thereby providing the information
needed to define the displacements of the mesozooplankton aggregations.</p>
      <p id="d1e684">The goals of the analysis are as follows: (1) to develop methods to visualize the SSLs in the lower part of the oxycline and in the hypoxic zone,
(2) to validate the SSLs in the oxygen-deficient waters using the taxonomic and quantitative characteristics of zooplankton vertical distribution
derived from stratified net sampling, and (3) to describe the seasonal variations of the deep mesozooplankton SSLs, including the diapause duration of CV <italic>C. euxinus</italic>, in relation<?pagebreak page955?> to oxygen concentration (the oxygen bounds for the mesozooplankton SSLs).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><?xmltex \currentcnt{1}?><?xmltex \def\figurename{Figure}?><label>Figure 1</label><caption><p id="d1e692">The moored Aqualog automatic mobile profiler with a deep-water Aquadopp acoustic Doppler current meter <bold>(a)</bold>. Transducer head of the shallow-water Aquadopp acoustic Doppler current meter on the Aqualog profiler <bold>(b)</bold>. Bottom right: the acoustic beams are shown in blue and are labeled <inline-formula><mml:math id="M52" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M53" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M54" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>.</p></caption>
        <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://os.copernicus.org/articles/17/953/2021/os-17-953-2021-f01.png"/>

      </fig>

</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Measurements</title>
      <p id="d1e748">This study is based on the comparative analysis of the amplitude of sound backscattering data at a frequency of 2 <inline-formula><mml:math id="M55" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">MHz</mml:mi></mml:mrow></mml:math></inline-formula> and oxygen concentration
data in seawater obtained in the NE Black Sea using a moored automatic mobile profiler, Aqualog (Fig. 1) (Ostrovskii and Zatsepin, 2011, 2016;
Ostrovskii et al., 2013). To obtain the depth profiles of the volume backscattering strength, the
Aqualog profiler was equipped with a Nortek Aquadopp acoustic Doppler current meter
(<uri>https://www.nortekgroup.com/assets/documents/ComprehensiveManual_Oct2017_compressed.pdf</uri>, last access: 19 July 2021).</p>
      <p id="d1e762">The Aquadopp is a narrow-band instrument
(<uri>https://support.nortekgroup.com/hc/en-us/articles/360029839331-The-Comprehensive-Manual-ADCP</uri>, last access: 19 July 2021)
that emits short sound pulses (pings) at a constant frequency and receives reflected (echo) signals. Plankton and suspended matter, as well as air and
gas bubbles, are the main scatterers of the sound. While sound pulses are scattered in all directions when they hit particles, a small fraction of the
incident sound pulse intensity is reflected. The Aquadopp current meter employs a mono-static system in which three transducers are used to transmit and
receive signals at an acoustic frequency of 2 <inline-formula><mml:math id="M56" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">MHz</mml:mi></mml:mrow></mml:math></inline-formula>. Measurements are made in the 90 <inline-formula><mml:math id="M57" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">dB</mml:mi></mml:mrow></mml:math></inline-formula> range with a resolution of 0.45 <inline-formula><mml:math id="M58" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">dB</mml:mi></mml:mrow></mml:math></inline-formula>. In
high-accuracy acoustic Doppler measurements, the acoustic beams are narrow, and each has a cone angle of 1.7<inline-formula><mml:math id="M59" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>. Three focused beams measure the
scattering strength with high sampling rates in a small volume (referred to as a single point). Two-sided acoustic beams are directed horizontally
with 90<inline-formula><mml:math id="M60" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> spacing between the axes of the beams (Fig. 1). These beams measure the volume scattering strength at the level of the
transducer. The third beam is inclined at an angle of 45<inline-formula><mml:math id="M61" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> to the plane formed by the axes of the other two beams. The piezoelectric element of
the transducer transmits sound waves when it vibrates. The vibration does not stop at once but is damped over time. The speed of sound in water and
the damping time of the membrane vibration determine the dead zone. In our case, this distance along the acoustic beam is approximately 0.35 <inline-formula><mml:math id="M62" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>
from the piezoelectric element of the transducer to the measurement cell (in the form of a truncated cone). The sound pulses are scattered and
reflected back to the transducer. In our case, the length of the cell along the axis of the acoustic beam is approximately 1.5 <inline-formula><mml:math id="M63" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>. Therefore,
the reflected sound pulse intensity obtained by the instrument is the weight average for the time during which the sound wave passes the distance of
1.85 <inline-formula><mml:math id="M64" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> to the far boundary of the measurement cell plus 1.85 <inline-formula><mml:math id="M65" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> on the way back. The received signal is processed in such a way that
the greatest contribution to the average value is made by the scattering in the center of the measurement cell at a distance of approximately
1.1 <inline-formula><mml:math id="M66" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> from the transducer. The device can transmit up to 23 sound pulses every 1 <inline-formula><mml:math id="M67" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">s</mml:mi></mml:mrow></mml:math></inline-formula>. The average value of the volume scattering
strength for sound pulses transmitted and received in 1 <inline-formula><mml:math id="M68" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">s</mml:mi></mml:mrow></mml:math></inline-formula> is recorded in the device's memory.</p>
      <p id="d1e877">The high frequency of 2 <inline-formula><mml:math id="M69" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">MHz</mml:mi></mml:mrow></mml:math></inline-formula> allows for observations of small-sized sound scatterers. Theoretically, a 2 <inline-formula><mml:math id="M70" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">MHz</mml:mi></mml:mrow></mml:math></inline-formula> transducer is most sensitive
to particles with a diameter of 0.23 <inline-formula><mml:math id="M71" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula> (estimates for different frequencies for standard seawater are given, for example, in Hofmann and
Peeters, 2013). However, this is not entirely applicable to zooplankton due to the complex shape of these organisms, their structure, their lipid
composition, and the presence of gases in their bodies (Stanton et al., 1994; Lavery et al., 2007; Lawson et al., 2006). However, as a simplified
model, copepod species are often considered cylinders, the scattering from which is defined as a function of the incident sound pressure, the acoustic
wavelength, and the distance between the transmitter and the animal. An approximate formula for describing sound scattering from an elongated weakly
scattering body of an animal also includes the angle of orientation of the body (Stanton et al., 1993, 1994). Unfortunately, the manufacturer of the
Aquadopp instrument does not specify information about the acoustic power of its transducers. The Aquadopp measurement data for the volume scattering
strength are presented in conventional units (counts). Without special calibration, it is not possible to determine the amount of falling sound
pressure in water at a distance from the instrument transducer.</p>
      <p id="d1e904">Since 2013, Aquadopp instruments with sideways-looking vertically mounted heads have been regularly used on the Aqualog profiling carrier
(Fig. 1). The carrier moves up or down at a speed of approximately 0.2 <inline-formula><mml:math id="M72" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, so the vertical resolution of the volume scattering strength
data is 0.2 <inline-formula><mml:math id="M73" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>. These data are averaged every 5 <inline-formula><mml:math id="M74" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">s</mml:mi></mml:mrow></mml:math></inline-formula>, allowing for the detection of an SSL with a thickness on the order of 1 <inline-formula><mml:math id="M75" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e949">In the context of this study, the ability to observe sound that has been reflected from zooplankton species at different angles is important. In the
case of settling detritus, the volume scattering strength of slanted beam <inline-formula><mml:math id="M76" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and that of horizontal beams <inline-formula><mml:math id="M77" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> or <inline-formula><mml:math id="M78" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> are approximately
the same. If the elongated suspended particles are oriented vertically or inclined, the amplitude of <inline-formula><mml:math id="M79" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> will significantly differ from the
amplitudes of <inline-formula><mml:math id="M80" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M81" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. This was shown for copepods based on both models of acoustic scattering at a frequency of 2 <inline-formula><mml:math id="M82" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">MHz</mml:mi></mml:mrow></mml:math></inline-formula> (Stanton
and Chu, 2000; Roberts and Jaffe, 2007) and laboratory experiments (Roberts and Jaffe, 2008).</p>
      <?pagebreak page956?><p id="d1e1027">Thus, by comparing the amplitudes <inline-formula><mml:math id="M83" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M84" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M85" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, one can judge the predominant orientation of species in zooplankton aggregations. It
is assumed that the aggregation's characteristic size is greater than the length of the acoustic measurement cell, that is, not less than
<inline-formula><mml:math id="M86" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2 <inline-formula><mml:math id="M87" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>, and its lifetime is longer than 10 <inline-formula><mml:math id="M88" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">s</mml:mi></mml:mrow></mml:math></inline-formula>. Therefore, during the Aqualog carrier movement at a speed of 0.2 <inline-formula><mml:math id="M89" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>,
the slanted and horizontal acoustic beams scan the same zooplankton aggregation. The complexity and variability of the acoustic backscatter makes it
difficult to compare the acoustic signals obtained for different observational periods. Proper normalization of the signals is needed to evaluate the
seasonal change in the vertical distribution of the mesozooplankton SSLs from many profiles despite the variability of the amplitude of the acoustic
backscatter. For the Aquadopp instrument, such normalization is the ratio of the volume scattering strength of the horizontal beams to the volume
scattering strength of the slanted beam:
          <disp-formula id="Ch1.E1" content-type="numbered"><label>1</label><mml:math id="M90" display="block"><mml:mrow><mml:mi>R</mml:mi><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d1e1140">It allows for a drastic reduction in the noise associated with clouds of sinking particles, which have an approximately equal area in the horizontal
projection to the projection with a 45<inline-formula><mml:math id="M91" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> angle of inclination. In some cases, the suspended particles can completely obscure the signal
associated with the aggregation of mesozooplankton. However, in this study, there were usually only a few such cases. As will be shown below in
Sect. 3, typically at depths from 60 to 120 <inline-formula><mml:math id="M92" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> during the day, the directional acoustic backscatter ratio <inline-formula><mml:math id="M93" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M94" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 1.05–1.2, and at night,
<inline-formula><mml:math id="M95" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M96" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 1.05. In the  Appendix, we will consider whether the mesozooplankton specimens' vertical orientation is tilted in the deep aggregations. The
analysis will be based on calculation of the ratio of the volume scattering strength of the horizontal beams <inline-formula><mml:math id="M97" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, assuming that due to the
tilt the standard deviation of <inline-formula><mml:math id="M98" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> should be greater than 0.</p>
      <p id="d1e1225">In addition to the Aquadopp instrument, a SeaBird 52MP CTD probe and Aanderaa 4330F and SBE 43F dissolved oxygen fast sensors were incorporated into
the Aqualog profiler aerobic zone (Ostrovskii and Zatsepin, 2016). The SeaBird 52MP CTD was specially designed for a moored profiling application in
which the instrument makes vertical profile measurements from a carrier that travels vertically beneath a subsurface floatation
(<uri>https://www.seabird.com/sbe-52-mp-moored-profiler-ctd-optional-do-sensor/product-downloads?id=60762467706</uri>, last access: 19 July 2021). The CTD is equipped with a pump that controls a flow at a constant speed through a single small diameter opening to
ensure the minimization of salinity spiking in the measurement data by the temperature and conductivity cell. On the Aqualog profiling carrier slowly
moving at <inline-formula><mml:math id="M99" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 0.2 <inline-formula><mml:math id="M100" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, the CTD sampling rate of once per second provides sufficient data to resolve ocean fine-scale thermohaline
structure. The accuracy of the CTD probe is 0.002 <inline-formula><mml:math id="M101" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula> for the temperature, <inline-formula><mml:math id="M102" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.0003 <inline-formula><mml:math id="M103" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">S</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> for the conductivity, and
<inline-formula><mml:math id="M104" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 0.1 % of the full scale range for the pressure. The SBE 43F accuracy should be no worse than <inline-formula><mml:math id="M105" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 2 % saturation, which can be
compared with 5 % for Aanderaa 4330F with a resolution better than 1 <inline-formula><mml:math id="M106" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> or 0.4 %
(<uri>https://www.aanderaa.com/media/pdfs/d378_aanderaa_oxygen_sensor_4330_4330f.pdf</uri>, last access: 19 July 2021). In practice, in
the Black Sea, SBE 43F showed very robust results in detecting the lower boundary of the oxic zone,<?pagebreak page957?> consistent with observations of the sigma-density
structure and definition of the oxic zone boundary for the northeastern region of the Sea (Ostrovskii and Zatsepin, 2016). The SeaBird 52MP CTD with
SBE 43F was regularly calibrated at the facility of the Southern Branch of the Shirshov Institute of Oceanology, Gelendzhik. The dissolved oxygen
measurements using the Aanderaa 4330F and SBE 43F sensors at the profiler were described in Ostrovskii and Zatsepin (2016) and later in a
companion paper (Ostrovskii et al., 2018). The fast-response sensing foils of the Aanderaa 4330F sensor were replaced by new foils two times in the
past 4 years. The CTD and dissolved oxygen sensors were mounted at the leading edge of the Aqualog profiler pointing into horizontal oncoming flow,
while hydrodynamic cowling (vertically oriented, wing-like) helped to stabilize the profiler orientation with respect to the flow direction. It should
be noted that the Black Sea environment is particularly suitable for profiling measurements since there is no biological fouling on the sensors of the
profiler, which is usually submerged into the hydrogen sulfide zone for <inline-formula><mml:math id="M107" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 10 <inline-formula><mml:math id="M108" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">min</mml:mi></mml:mrow></mml:math></inline-formula> every 1–2 <inline-formula><mml:math id="M109" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula>. Finally, the dissolved oxygen
sensor data were verified with the water samples at standard depths for determination of dissolved oxygen by Winkler method (not shown here).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2"><?xmltex \currentcnt{2}?><?xmltex \def\figurename{Figure}?><label>Figure 2</label><caption><p id="d1e1345">The Black Sea coastline (<uri>https://osmdata.openstreetmap.de/data/coastlines.html</uri>, last access: 19 July 2021). The observational site off Gelendzhik is shown by a red dot. © OpenStreetMap contributors 2021. Distributed under the Open Data Commons Open Database License (ODbL) v1.0.</p></caption>
        <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://os.copernicus.org/articles/17/953/2021/os-17-953-2021-f02.png"/>

      </fig>

<?xmltex \floatpos{p}?><table-wrap id="Ch1.T1" specific-use="star"><?xmltex \currentcnt{1}?><label>Table 1</label><caption><p id="d1e1361">Deployments of the profiler Aqualog-6 with a Nortek Aquadopp current meter in the NE Black Sea and the dates of the zooplankton sampling near the profiler mooring site in 2010–2021. Since 2013, the profiler Aqualog has been equipped with a SBE 52MP CTD probe with a SBE 43F DO sensor. Additional sensors used on the profiler were as follows: Oxygen Aanderaa 4330F, Seapoint Turbidity Meter, and Seapoint Fluorometer. The unit “cpd” denotes the profiling cycles per day.</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.90}[.90]?><oasis:tgroup cols="8">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="justify" colwidth="13mm"/>
     <oasis:colspec colnum="5" colname="col5" align="justify" colwidth="13mm"/>
     <oasis:colspec colnum="6" colname="col6" align="justify" colwidth="13mm"/>
     <oasis:colspec colnum="7" colname="col7" align="justify" colwidth="22mm"/>
     <oasis:colspec colnum="8" colname="col8" align="justify" colwidth="40mm"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Survey</oasis:entry>
         <oasis:entry colname="col2">Start (UTC)</oasis:entry>
         <oasis:entry colname="col3">End (UTC)</oasis:entry>
         <oasis:entry colname="col4">Profile cycle interval, h</oasis:entry>
         <oasis:entry colname="col5">Profile depth range, m</oasis:entry>
         <oasis:entry colname="col6">Number of profiles</oasis:entry>
         <oasis:entry colname="col7">Additional sensors at<?xmltex \hack{\hfill\break}?>the profiler</oasis:entry>
         <oasis:entry colname="col8">Stratified net sampling for zooplankton/sampling for determination of dissolved oxygen by Winkler method</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">1</oasis:entry>
         <oasis:entry colname="col2">21 Jun 2010 16:03</oasis:entry>
         <oasis:entry colname="col3">22 Jun 2010 16:50</oasis:entry>
         <oasis:entry colname="col4"><?xmltex \hack{\hfill}?>1</oasis:entry>
         <oasis:entry colname="col5"><?xmltex \hack{\hfill}?>19–245</oasis:entry>
         <oasis:entry colname="col6"><?xmltex \hack{\hfill}?>25</oasis:entry>
         <oasis:entry colname="col7"><inline-formula><mml:math id="M112" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col8">Zooplankton:<?xmltex \hack{\hfill\break}?>21 Jun 2010 18:05–19:00<?xmltex \hack{\hfill\break}?>21 Jun 2010 21:10–21:55<?xmltex \hack{\hfill\break}?>22 Jun 2010 00:05–00:50<?xmltex \hack{\hfill\break}?>22 Jun 2010 05:30–06:20<?xmltex \hack{\hfill\break}?>22 Jun 2010 09:00–09:50</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">2</oasis:entry>
         <oasis:entry colname="col2">2 Oct 2013 12:42</oasis:entry>
         <oasis:entry colname="col3">7 Oct 2013 09:14</oasis:entry>
         <oasis:entry colname="col4"><?xmltex \hack{\hfill}?>1</oasis:entry>
         <oasis:entry colname="col5"><?xmltex \hack{\hfill}?>30–220</oasis:entry>
         <oasis:entry colname="col6"><?xmltex \hack{\hfill}?>234</oasis:entry>
         <oasis:entry colname="col7">–</oasis:entry>
         <oasis:entry colname="col8">Zooplankton:<?xmltex \hack{\hfill\break}?>6 Oct 2013 12:30–13:20</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">3</oasis:entry>
         <oasis:entry colname="col2">28 Jun 2014 10:46</oasis:entry>
         <oasis:entry colname="col3">2 Jul 2014 13:24</oasis:entry>
         <oasis:entry colname="col4"><?xmltex \hack{\hfill}?>1</oasis:entry>
         <oasis:entry colname="col5"><?xmltex \hack{\hfill}?>20–240</oasis:entry>
         <oasis:entry colname="col6"><?xmltex \hack{\hfill}?>198</oasis:entry>
         <oasis:entry colname="col7">4330F</oasis:entry>
         <oasis:entry colname="col8">Zooplankton:<?xmltex \hack{\hfill\break}?>1 Jul 2014 13:30–14:30<?xmltex \hack{\hfill\break}?>2 Jul 2014 02:30–03:30<?xmltex \hack{\hfill\break}?>Dissolved oxygen:<?xmltex \hack{\hfill\break}?>12 Jul 2020, 14 Jul 2020,<?xmltex \hack{\hfill\break}?>16 Jul 2020</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">4</oasis:entry>
         <oasis:entry colname="col2">6 Oct 2014 05:50</oasis:entry>
         <oasis:entry colname="col3">17 Dec 2014 12:02</oasis:entry>
         <oasis:entry colname="col4"><?xmltex \hack{\hfill}?>6</oasis:entry>
         <oasis:entry colname="col5"><?xmltex \hack{\hfill}?>30–220</oasis:entry>
         <oasis:entry colname="col6"><?xmltex \hack{\hfill}?>860</oasis:entry>
         <oasis:entry colname="col7">4330F</oasis:entry>
         <oasis:entry colname="col8">–</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">5</oasis:entry>
         <oasis:entry colname="col2">1 Jan 2016 18:00</oasis:entry>
         <oasis:entry colname="col3">6 Mar 2016 06:00</oasis:entry>
         <oasis:entry colname="col4"><?xmltex \hack{\hfill}?>2</oasis:entry>
         <oasis:entry colname="col5"><?xmltex \hack{\hfill}?>28–208</oasis:entry>
         <oasis:entry colname="col6"><?xmltex \hack{\hfill}?>1490</oasis:entry>
         <oasis:entry colname="col7">4330F</oasis:entry>
         <oasis:entry colname="col8">–</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">6</oasis:entry>
         <oasis:entry colname="col2">6 Oct 2016 05:47</oasis:entry>
         <oasis:entry colname="col3">10 Oct 2016 10:21</oasis:entry>
         <oasis:entry colname="col4"><?xmltex \hack{\hfill}?>2</oasis:entry>
         <oasis:entry colname="col5"><?xmltex \hack{\hfill}?>25–220</oasis:entry>
         <oasis:entry colname="col6"><?xmltex \hack{\hfill}?>98</oasis:entry>
         <oasis:entry colname="col7">4330F,<?xmltex \hack{\hfill\break}?>Fluorometer,<?xmltex \hack{\hfill\break}?>Turbidity Meter</oasis:entry>
         <oasis:entry colname="col8">Zooplankton:<?xmltex \hack{\hfill\break}?>4 Oct 2016 22:00–23:00<?xmltex \hack{\hfill\break}?>5 Oct 2016 11:05–11:50</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">7</oasis:entry>
         <oasis:entry colname="col2">10 Oct 2016 13:24</oasis:entry>
         <oasis:entry colname="col3">12 Nov 2016 12:45</oasis:entry>
         <oasis:entry colname="col4"><?xmltex \hack{\hfill}?>2</oasis:entry>
         <oasis:entry colname="col5"><?xmltex \hack{\hfill}?>30–220</oasis:entry>
         <oasis:entry colname="col6"><?xmltex \hack{\hfill}?>790</oasis:entry>
         <oasis:entry colname="col7">4330F,<?xmltex \hack{\hfill\break}?>Fluorometer,<?xmltex \hack{\hfill\break}?>Turbidity Meter</oasis:entry>
         <oasis:entry colname="col8">–</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">8</oasis:entry>
         <oasis:entry colname="col2">10 Feb 2019 12:00</oasis:entry>
         <oasis:entry colname="col3">24 Feb 2019 04:08</oasis:entry>
         <oasis:entry colname="col4"><?xmltex \hack{\hfill}?>2</oasis:entry>
         <oasis:entry colname="col5"><?xmltex \hack{\hfill}?>25–206</oasis:entry>
         <oasis:entry colname="col6"><?xmltex \hack{\hfill}?>328</oasis:entry>
         <oasis:entry colname="col7">Turbidity Meter</oasis:entry>
         <oasis:entry colname="col8">–</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">9</oasis:entry>
         <oasis:entry colname="col2">16 Apr 2019 11:34</oasis:entry>
         <oasis:entry colname="col3">28 May 2019 09:24</oasis:entry>
         <oasis:entry colname="col4"><?xmltex \hack{\hfill}?>1</oasis:entry>
         <oasis:entry colname="col5"><?xmltex \hack{\hfill}?>46–206</oasis:entry>
         <oasis:entry colname="col6"><?xmltex \hack{\hfill}?>2016</oasis:entry>
         <oasis:entry colname="col7">4330F,<?xmltex \hack{\hfill\break}?>Turbidity Meter</oasis:entry>
         <oasis:entry colname="col8">–</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">10</oasis:entry>
         <oasis:entry colname="col2">1 Jun 2019 10:32</oasis:entry>
         <oasis:entry colname="col3">27 Aug 2019 12:02</oasis:entry>
         <oasis:entry colname="col4"><?xmltex \hack{\hfill}?>1–2<?xmltex \hack{\hfill\break}?><?xmltex \hack{\hfill}?>(16 cpd)</oasis:entry>
         <oasis:entry colname="col5"><?xmltex \hack{\hfill}?>22–200</oasis:entry>
         <oasis:entry colname="col6"><?xmltex \hack{\hfill}?>2784</oasis:entry>
         <oasis:entry colname="col7">Turbidity Meter</oasis:entry>
         <oasis:entry colname="col8">Dissolved oxygen:<?xmltex \hack{\hfill\break}?>6 Jul 2019, 8 Jul 2019,<?xmltex \hack{\hfill\break}?>12 Jul 2019</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">11</oasis:entry>
         <oasis:entry colname="col2">30 Aug 1209 16:00</oasis:entry>
         <oasis:entry colname="col3">15 Oct 2019 20:26</oasis:entry>
         <oasis:entry colname="col4"><?xmltex \hack{\hfill}?>1–2<?xmltex \hack{\hfill\break}?><?xmltex \hack{\hfill}?>(16 cpd)</oasis:entry>
         <oasis:entry colname="col5"><?xmltex \hack{\hfill}?>22–200</oasis:entry>
         <oasis:entry colname="col6"><?xmltex \hack{\hfill}?>1482</oasis:entry>
         <oasis:entry colname="col7">Turbidity Meter</oasis:entry>
         <oasis:entry colname="col8">–</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">12</oasis:entry>
         <oasis:entry colname="col2">28 Oct 2019 14:00</oasis:entry>
         <oasis:entry colname="col3">24 Dec 2019 20:36</oasis:entry>
         <oasis:entry colname="col4"><?xmltex \hack{\hfill}?>1–2<?xmltex \hack{\hfill\break}?><?xmltex \hack{\hfill}?>(16 cpd)</oasis:entry>
         <oasis:entry colname="col5"><?xmltex \hack{\hfill}?>21–204</oasis:entry>
         <oasis:entry colname="col6"><?xmltex \hack{\hfill}?>1491</oasis:entry>
         <oasis:entry colname="col7">4330F</oasis:entry>
         <oasis:entry colname="col8">–</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">13</oasis:entry>
         <oasis:entry colname="col2">28 Mar 2020 11:30</oasis:entry>
         <oasis:entry colname="col3">24 May 2020 02:03</oasis:entry>
         <oasis:entry colname="col4"><?xmltex \hack{\hfill}?>1–2<?xmltex \hack{\hfill\break}?><?xmltex \hack{\hfill}?>(16  cpd)</oasis:entry>
         <oasis:entry colname="col5"><?xmltex \hack{\hfill}?>20–200</oasis:entry>
         <oasis:entry colname="col6"><?xmltex \hack{\hfill}?>1584</oasis:entry>
         <oasis:entry colname="col7">4330F,<?xmltex \hack{\hfill\break}?>Fluorometer</oasis:entry>
         <oasis:entry colname="col8">–</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">14</oasis:entry>
         <oasis:entry colname="col2">16 Jul 2020 05:00</oasis:entry>
         <oasis:entry colname="col3">26 Jul 2020 23:13</oasis:entry>
         <oasis:entry colname="col4"><?xmltex \hack{\hfill}?>1–2<?xmltex \hack{\hfill\break}?><?xmltex \hack{\hfill}?>(16 cpd)</oasis:entry>
         <oasis:entry colname="col5"><?xmltex \hack{\hfill}?>23–201</oasis:entry>
         <oasis:entry colname="col6"><?xmltex \hack{\hfill}?>444</oasis:entry>
         <oasis:entry colname="col7">4330F,<?xmltex \hack{\hfill\break}?>Fluorometer</oasis:entry>
         <oasis:entry colname="col8">Dissolved oxygen:<?xmltex \hack{\hfill\break}?>17 Jul 2020, 20 Jul 2020</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">15</oasis:entry>
         <oasis:entry colname="col2">3 Oct 2020 05:00</oasis:entry>
         <oasis:entry colname="col3">27 Nov 2020 09:37</oasis:entry>
         <oasis:entry colname="col4"><?xmltex \hack{\hfill}?>2</oasis:entry>
         <oasis:entry colname="col5"><?xmltex \hack{\hfill}?>20–203</oasis:entry>
         <oasis:entry colname="col6"><?xmltex \hack{\hfill}?>1320</oasis:entry>
         <oasis:entry colname="col7">4330F,<?xmltex \hack{\hfill\break}?>Fluorometer</oasis:entry>
         <oasis:entry colname="col8">–</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">16</oasis:entry>
         <oasis:entry colname="col2">11 Dec 2020 09:06</oasis:entry>
         <oasis:entry colname="col3">7 Apr 2021 01:04</oasis:entry>
         <oasis:entry colname="col4"><?xmltex \hack{\hfill}?>4</oasis:entry>
         <oasis:entry colname="col5"><?xmltex \hack{\hfill}?>21–203</oasis:entry>
         <oasis:entry colname="col6"><?xmltex \hack{\hfill}?>1399</oasis:entry>
         <oasis:entry colname="col7">4330F,<?xmltex \hack{\hfill\break}?>Fluorometer<inline-formula><mml:math id="M113" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">b</mml:mi></mml:msup></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col8">–</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table><?xmltex \begin{scaleboxenv}{.90}[.90]?><table-wrap-foot><p id="d1e1364"><?xmltex \hack{\vspace*{2mm}}?><inline-formula><mml:math id="M110" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">a</mml:mi></mml:msup></mml:math></inline-formula> No dissolved oxygen sensor. <inline-formula><mml:math id="M111" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">b</mml:mi></mml:msup></mml:math></inline-formula> Nortek Aquadopp broken.</p></table-wrap-foot><?xmltex \end{scaleboxenv}?></table-wrap>

      <?pagebreak page959?><p id="d1e2021">The profiler mooring station was deployed approximately 4 nmi from the coast at the uppermost part of the continental slope at
44<inline-formula><mml:math id="M114" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>29.3<inline-formula><mml:math id="M115" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> N and 37<inline-formula><mml:math id="M116" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>58.7<inline-formula><mml:math id="M117" display="inline"><mml:msup><mml:mi/><mml:mo>′</mml:mo></mml:msup></mml:math></inline-formula> (Fig. 2). From June 2010 to April 2021, 16 surveys lasting from a few days to 3 months
were carried out (Table 1) (Solovyev et al., 2021). During the surveys, the device automatically performed a profiling cycle usually every
1–2 <inline-formula><mml:math id="M118" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula>, descending to the near-bottom depth of 200–220 <inline-formula><mml:math id="M119" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> and ascending to the upper layer while remaining submerged at a depth of
20–40 <inline-formula><mml:math id="M120" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>. In particular, in 2016–2020, more than 14 000 multiparameter sets of vertical profiles were collected year-round (except March).<?xmltex \hack{\newpage}?></p>
      <p id="d1e2086">To acquire taxonomic and quantitative features of zooplankton vertical distribution, stratified net samples were taken from R/V <italic>Ashamba</italic>
(Table 1) near the moored profiler Aqualog with a Juday net (mouth area 0.1 <inline-formula><mml:math id="M121" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>, mesh size 180 <inline-formula><mml:math id="M122" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>) equipped with a closing
device. The towing speed was 0.9–1.0 <inline-formula><mml:math id="M123" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>, and the net was closed without stopping the upward movement. The sampling was carried out in
calm weather so that the wire angle was not higher than 10<inline-formula><mml:math id="M124" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>. The sampling was carried out at earlier stages of this project in June 2010,
October 2013, and July 2014, as well as later in October 2016.</p>
      <p id="d1e2139">The net hauls targeted the backscattering aggregation considering that their locations were associated with specific isopycnal layers (Ostrovskii and
Zatsepin, 2011, Fig. 9). Vertical profiles of temperature, salinity, and density were obtained with a shipborne SeaBird 19plus CTD probe prior to
mesozooplankton sampling. Depth strata were chosen based on the CTD profiles to sample the upper mixed layer (UML), the thermocline layer, the layer
from the oxycline upper boundary (<inline-formula><mml:math id="M125" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M126" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 14.25) to the lower boundary of the thermocline, and two layers in the oxygen-deficient
zone: the layer from depths of <inline-formula><mml:math id="M127" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> 15.7 to <inline-formula><mml:math id="M128" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> 15.4 and the layer from 2–3 <inline-formula><mml:math id="M129" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> below <inline-formula><mml:math id="M130" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> 15.9 to
<inline-formula><mml:math id="M131" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> 15.7.</p>
      <p id="d1e2213">The time of sampling corresponded to the day–night vertical distribution and upward–downward migration of zooplankton (June 2010), the daytime
distribution (October 2013), and the day–night distribution (July 2014 and October 2016). The samples were immediately fixed with buffered
formaldehyde (4 % final concentration of seawater–formaldehyde solution). The volume of filtered sea water was estimated from the area of the net
mouth and the length of the released wire. Organisms were identified and counted under a stereomicroscope equipped with an ocular
micrometer. Zooplankters were identified at the level of species and age stages of copepods and size classes (with an interval of 2 <inline-formula><mml:math id="M132" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>) of
chaetognaths and ctenophores. The smallest organisms (meroplankton, appendicularians, copepod nauplii, and ova) considered in the analysis were
180 <inline-formula><mml:math id="M133" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> in size. Mesozooplankton biomass in terms of dry weight (DW) was estimated based on the published length–DW regressions for
different species summarized in Arashkevich et al. (2014, Table 2). Biomass values were standardized to units of milligrams of dry weight per cubic meter (<inline-formula><mml:math id="M134" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mg</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">DW</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) or milligrams of dry weight per square meter
(<inline-formula><mml:math id="M135" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mg</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">DW</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>). The intensity of the echo signal strongly depends on the material properties of the organism's tissue (Stanton et al., 1994);
therefore, when comparing the pattern of the scattering signal intensity with the pattern of zooplankton distribution in a community containing
different taxa, it was reasonable to express zooplankton biomass as DW or carbon (Flagg and Smith, 1989; Heywood et al., 1991; Ashjian et al.,
1998). For a graphical presentation of the results, six components of zooplankton were considered: copepods <italic>Calanus euxinus</italic> and
<italic>Pseudocalanus elongatus</italic>, small crustaceans (<italic>Acartia clausi</italic>, <italic>Paracalanus parvus</italic>, <italic>Oithona similis</italic> and cladocerans),
heterotrophic dinoflagellate <italic>Noctiluca scintillans</italic>, chaetognaths <italic>Parasagitta setosa</italic>, and varia (ctenophores <italic>Pleurobrachia pileus</italic>, appendicularians, meroplankton, decapod larvae, Pisces ova).</p>
      <p id="d1e2300">One method for calculating vertical migration speed of zooplankton from the sound backscatter data of the acoustic current meter at the profiler
Aqualog was described in Pezacki et al. (2017). However, the vertical migration speed of mesozooplankton is beyond the focus of this study. Only once
when discussing the pattern of the diel vertical migration is the slope of the migration track on the echogram (see Fig. 9 below) considered to give
a rough idea about the dive and the ascent of mesozooplankton. Much more effort would certainly be needed to visualize the specimens' vertical swimming.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><?xmltex \currentcnt{3}?><?xmltex \def\figurename{Figure}?><label>Figure 3</label><caption><p id="d1e2306">Diurnal motions of the sound-scattering layers in the oxic zone. The depth–time scatterplot for profiles of acoustic backscatter amplitude at 2 <inline-formula><mml:math id="M136" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">MHz</mml:mi></mml:mrow></mml:math></inline-formula> was obtained using the Aquadopp instrument at the moored profiler during verification study involving net sampling of zooplankton on 21 and 22 June 2010.</p></caption>
        <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://os.copernicus.org/articles/17/953/2021/os-17-953-2021-f03.png"/>

      </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4"><?xmltex \currentcnt{4}?><?xmltex \def\figurename{Figure}?><label>Figure 4</label><caption><p id="d1e2325">The diel changes in vertical distributions of (left) total mesozooplankton biomass, (middle) zooplankton composition, and (right) temperature (<inline-formula><mml:math id="M137" display="inline"><mml:mi>T</mml:mi></mml:math></inline-formula>) and density (<inline-formula><mml:math id="M138" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) near the mooring site on 21 and 22 June 2010. The temperature and density profiles were used for the selection of sampling strata. CE – <italic>Calanus euxinus</italic>; PE – <italic>Pseudocalanus elongatus</italic>; SC – small crustaceans; NS – <italic>Noctiluca scintillans</italic>; PE – <italic>Parasagitta setosa</italic>; Var – varia.</p></caption>
        <?xmltex \igopts{width=230.467323pt}?><graphic xlink:href="https://os.copernicus.org/articles/17/953/2021/os-17-953-2021-f04.png"/>

      </fig>

</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Results</title>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>Acoustic scattering by mesozooplankton aggregations</title>
      <p id="d1e2380">The first validation data for the Aquadopp observations were obtained on 21 and 22. June 2010. The sound-scattering layers were identified at the raw
echogram (Fig. 3) as mesozooplankton aggregations by comparison with the net sampling data (Fig. 4). The zooplankton net sampling data were consistent
with the acoustic backscatter, indicating short-term variations in biomass and diel vertical migration of zooplankton.</p>
      <?pagebreak page960?><p id="d1e2383">The total mesozooplankton biomass in the entire water column varied from 0.99 to 3.57 <inline-formula><mml:math id="M139" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">DW</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. Zooplankton was dominated by the copepod
<italic>Calanus euxinus</italic>, which made up the mean 58 % with the standard deviation (SD) <inline-formula><mml:math id="M140" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 14 % of the total biomass (below for the sake of
brevity, such estimates are denoted as mean <inline-formula><mml:math id="M141" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> SD%). The contribution of chaetognaths <italic>Parasagitta setosa</italic> was 21 <inline-formula><mml:math id="M142" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 11 %,
followed by copepods <italic>Pseudocalanus elongatus</italic> (13 <inline-formula><mml:math id="M143" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 7 % of the total biomass). The sum share of other groups of mesozooplankton did
not exceed 7 % of the total biomass.</p>
      <p id="d1e2444">The pattern of the vertical distribution of mesozooplankton biomass reveals a relatively uniform distribution over depth in the evening twilight
(18:05–19:00) and at dawn (05:30–06:20) (Fig. 4, left column). At night (21:10–21:55 and 00:05–00:50), the highest concentration of zooplankton
was observed in the thermocline layer, while in the daytime (09:00–09:50), the zooplankton maximum was in the layer between the density surfaces
<inline-formula><mml:math id="M144" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> 15.7 and 15.4 (Fig. 4, left column), in accordance with the diurnal changes in the volume
backscatter strength (Fig. 3). The deepest layer bounded by isopycnals <inline-formula><mml:math id="M145" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> 15.9 and 15.7 was inhabited by nonmigrating copepods, the
fifth copepodite stage (CV) of <italic>C. euxinus</italic> (median prosome length 2.3 <inline-formula><mml:math id="M146" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>), persistently staying at this depth throughout the day
(Figs. 3 and 4, middle column). Visual inspection of live samples revealed quiescent behavior of these specimens and large oil sac volume inside their
body, suggesting a diapausing state in <italic>C. euxinus</italic> CV collected from the deepest layer (Vinogradov et al., 1992).</p>
      <p id="d1e2483">Three migrating species, copepodites CIV–CVI of <italic>C. euxinus</italic> (median prosome length 2.6 <inline-formula><mml:math id="M147" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>), CV–CVI <italic>P. elongatus</italic> (median
prosome length 0.92 <inline-formula><mml:math id="M148" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>), and chaetognaths <italic>P. setosa</italic> (median length 19 <inline-formula><mml:math id="M149" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>), formed daytime zooplankton aggregations in the
oxygen-deficient zone (Fig. 4, middle column). Ctenophore <italic>Pleurobrachia pileus</italic>, also inhabiting the deep
layers in the daytime, contributed negligibly to the total biomass due to the low dry matter content in their gelatinous bodies and their low
abundance (shown as Var in Fig. 4). At night, most of the migrating zooplankters were concentrated in the thermocline and did not ascend to the warm
UML, which was inhabited by small copepods, cladocerans, and small (<inline-formula><mml:math id="M150" display="inline"><mml:mo lspace="0mm">&lt;</mml:mo></mml:math></inline-formula> 6 <inline-formula><mml:math id="M151" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>) chaetognaths.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><?xmltex \currentcnt{5}?><?xmltex \def\figurename{Figure}?><label>Figure 5</label><caption><p id="d1e2541"><bold>(a)</bold> The time–depth graph of the Aquadopp horizontal-beam <inline-formula><mml:math id="M152" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> echogram showing acoustic backscatter intensity (counts) on 5–7 October 2013. The Aqualog profiler with the Aquadopp instrument performed ascending–descending cycles every 1 <inline-formula><mml:math id="M153" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula>. The upper, middle, and lower white lines are for isopycnals  <inline-formula><mml:math id="M154" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> 15.4, 15.7, and 15.9, respectively. <bold>(b)</bold> Time–depth scatterplot of the Aquadopp directional acoustic backscatter ratio <inline-formula><mml:math id="M155" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M156" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M157" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. Colored lines show [<inline-formula><mml:math id="M158" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] <inline-formula><mml:math id="M159" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 50 <inline-formula><mml:math id="M160" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> (upper black line); [<inline-formula><mml:math id="M161" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] <inline-formula><mml:math id="M162" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 10 <inline-formula><mml:math id="M163" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> (lower black line); and  <inline-formula><mml:math id="M164" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M165" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 15.9 <inline-formula><mml:math id="M166" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">kg</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> (white line), which can be taken as a proxy for the boundary of the oxygen zone in the NE Black Sea (Glazer et al., 2006, Ostrovskii and Zatsepin, 2016). Notice that due to upwelling, the oxycline was moved upward. Vertical dotted white lines indicate a 17.3 <inline-formula><mml:math id="M167" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula> time interval, which is equal to the period of inertial oscillations at the latitude of the observation. They approximately coincide with troughs of inertial waves.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://os.copernicus.org/articles/17/953/2021/os-17-953-2021-f05.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>Zooplankton aggregations visualized using the directional acoustic backscatter ratio</title>
      <p id="d1e2754">The echograms based on the data from horizontal-beam transducers <inline-formula><mml:math id="M168" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M169" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> often reveal aggregations of zooplankton at depths of
80–120 <inline-formula><mml:math id="M170" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> in the daytime (Fig. 5). The aggregations begin to rise around sunset and descend before dawn. Thin, nearly vertical lines on the
echogram indicate acoustic traces of the migrating mesozooplankton species. The echogram also shows patches that occupy the entire water column, from
the upper to the lower measurement depth, penetrating below the surface <inline-formula><mml:math id="M171" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> 15.9 and then deeper into the hydrogen sulfide zone. These
are clouds of suspended particles (see, for example, Klyuvitkin et al., 2016).<?pagebreak page961?> Acoustic scattering by clouds of particles sinking through the water
column can obscure zooplankton aggregations.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><?xmltex \currentcnt{6}?><?xmltex \def\figurename{Figure}?><label>Figure 6</label><caption><p id="d1e2800">The daytime vertical distributions of <bold>(a)</bold> total mesozooplankton biomass, <bold>(b)</bold> zooplankton composition, and <bold>(c)</bold> temperature (<inline-formula><mml:math id="M172" display="inline"><mml:mi>T</mml:mi></mml:math></inline-formula>) and density (<inline-formula><mml:math id="M173" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) near the mooring site at 12:30–13:20 on 6 October 2013. Temperature and density profiles <bold>(c)</bold> indicate the selection of sampling strata. CE – <italic>Calanus euxinus</italic>; PE – <italic>Pseudocalanus elongatus</italic>; SC – small crustaceans; NS – <italic>Noctiluca scintillans</italic>; PE – <italic>Parasagitta setosa</italic>; Var – varia.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://os.copernicus.org/articles/17/953/2021/os-17-953-2021-f06.png"/>

        </fig>

      <p id="d1e2852">The layers of elevated acoustic backscatter amplitude due to deep zooplankton aggregations are accounted for using the <inline-formula><mml:math id="M174" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> graphs (Fig. 5b) that were
validated by net sampling on 6 October 2013 (Fig. 6), although sampling was not performed at night due to stormy weather. Since the depths of the
isopycnals of 15.9 and 15.7 differed by only 3 <inline-formula><mml:math id="M175" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>, the integrated zooplankton sample was taken in the layer between
<inline-formula><mml:math id="M176" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M177" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 15.9 and <inline-formula><mml:math id="M178" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M179" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 15.4. In this layer, the contributions of <italic>Calanus euxinus</italic>, <italic>Parasagitta setosa</italic>, and <italic>Pseudocalanus elongatus</italic> to the total biomass were 60 %, 26 %, and 12 %, respectively (Fig. 6b). The extremely low
zooplankton biomass (<inline-formula><mml:math id="M180" display="inline"><mml:mo lspace="0mm">&lt;</mml:mo></mml:math></inline-formula> 2 <inline-formula><mml:math id="M181" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mg</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">DW</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>) in the upper 50 <inline-formula><mml:math id="M182" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> layer (Fig. 6a and b) is consistent with data on a 4-fold decrease in
the annual average biomass of upper dwelling zooplankton in 2013 compared to previous years (Arashkevich et al., 2015).</p>
      <?pagebreak page962?><p id="d1e2953">Zooplankton diel vertical migration trajectories in the <inline-formula><mml:math id="M183" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> graph are noticeably clear below 40 <inline-formula><mml:math id="M184" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> (Fig. 5b). The explanation of these
phenomena could be that the scattering area of the elongated bodies of the zooplankton species is larger in the horizontal projection than in the
inclined projection at an angle of 45<inline-formula><mml:math id="M185" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>. Therefore, the orientation of the bodies of mesozooplankton species appears to be mainly vertical
during migration. At night, these specimens are randomly oriented in the upper layer, where <inline-formula><mml:math id="M186" display="inline"><mml:mrow><mml:mi>R</mml:mi><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>. In addition to the diel vertical
migrations, intraday vertical fluctuations of zooplankton occur with an inertial period (Fig. 5b). The vertical displacements of the daytime deep
mesozooplankton aggregations are coherent with the vertical displacements of both isopycnals and isooxylines. The displacements of isopycnals with
amplitudes up to 20 <inline-formula><mml:math id="M187" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> are mainly due to near-inertial waves.</p>

      <?xmltex \floatpos{p}?><fig id="Ch1.F7"><?xmltex \currentcnt{7}?><?xmltex \def\figurename{Figure}?><label>Figure 7</label><caption><p id="d1e3002"><bold>(a)</bold> The time–depth scatterplot of the Aquadopp horizontal-beam echo <inline-formula><mml:math id="M188" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> on 6–10 October 2016. <bold>(b)</bold> The time–depth graph of the Aquadopp directional acoustic backscatter ratio <inline-formula><mml:math id="M189" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula>. The isopycnals and isooxylines are superimposed near the SSLs.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://os.copernicus.org/articles/17/953/2021/os-17-953-2021-f07.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><?xmltex \currentcnt{8}?><?xmltex \def\figurename{Figure}?><label>Figure 8</label><caption><p id="d1e3051">Day–night vertical distribution of <bold>(a)</bold> total mesozooplankton biomass, <bold>(b)</bold> zooplankton composition, and <bold>(c)</bold> temperature (<inline-formula><mml:math id="M190" display="inline"><mml:mi>T</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M191" display="inline"><mml:mrow class="unit"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup><mml:mi mathvariant="normal">C</mml:mi></mml:mrow></mml:math></inline-formula>) and density (<inline-formula><mml:math id="M192" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) near the mooring site at 22:00–23:00 on 4 October (night) and 11:05–11:50 on 5 October (day) 2016. Temperature and density profiles <bold>(c)</bold> indicate the selection of sampling strata. CE – <italic>Calanus euxinus</italic>; PE – <italic>Pseudocalanus elongatus</italic>; SC – small crustaceans; NS – <italic>Noctiluca scintillans</italic>; PE – <italic>Parasagitta setosa</italic>; Var – varia.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://os.copernicus.org/articles/17/953/2021/os-17-953-2021-f08.png"/>

        </fig>

      <?pagebreak page963?><p id="d1e3115">In October 2016, persistent aggregation of diapausing <italic>C. euxinus</italic> was detected in the acoustic backscatter signal (Fig. 7), unlike October
2013 (Fig. 5). Zooplankton sampling was performed at midnight and midday on 4 and 5 October 2016 (Fig. 8). The pattern of zooplankton distribution was
similar to that in June 2010 (Fig. 4), both in terms of the total biomass and composition of zooplankton and in terms of the day–night vertical
distribution. The total mesozooplankton biomass of 1.8–2.3 <inline-formula><mml:math id="M193" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">DW</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">m</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> was dominated by three species: <italic>C. euxinus</italic>
(59 %–76 %), <italic>P. setosa</italic> (9 %–22 %), and <italic>P. elongatus</italic> (5 %–10 %). At night, the maximum aggregation of
migrating zooplankters was in the thermocline layer, and at midday, it was in the layer between isopycnals <inline-formula><mml:math id="M194" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> 15.7 and 15.4
(Fig. 8a). Daytime zooplankton aggregation consisted mainly of <italic>C. euxinus</italic> (92 % of total biomass) with a small contribution from
chaetognaths (7 % of total biomass) (Fig. 5b). The layer between isopycnals <inline-formula><mml:math id="M195" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> 15.9 and 15.7 was persistently occupied by
diapausing <italic>C. euxinus</italic> CVs. The chaetognaths found in this layer were represented by spent specimens and corpses (Fig. 8b). UML was inhabited
by nonmigrating small copepods, cladocerans, and small chaetognaths.</p>
      <p id="d1e3179">The net sampling data on the day–night vertical distribution of mesozooplankton agreed broadly with the acoustic backscatter observations obtained
during the next few days (Fig. 7). On the echogram, one can see a persistently existing backscattering layer associated with the isopycnal layer near
<inline-formula><mml:math id="M196" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M197" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 15.9, as well as patches of the high-volume backscattering strength at depth during the daytime and their movement into
shallower layers at night.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9" specific-use="star"><?xmltex \currentcnt{9}?><?xmltex \def\figurename{Figure}?><label>Figure 9</label><caption><p id="d1e3203"><bold>(a)</bold> The time–depth graph of the Aquadopp horizontal-beam echo <inline-formula><mml:math id="M198" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:math></inline-formula> during the moored profiler survey on 28 June–2 July 2014. The isopycnals are superimposed near the SSLs. <bold>(b)</bold> The graph of time–depth variation in <inline-formula><mml:math id="M199" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> based on the measurements of sound backscattering. The upper and lower black lines are isooxylines of 50 and 10 <inline-formula><mml:math id="M200" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>, respectively. The white line indicates isopycnal  <inline-formula><mml:math id="M201" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M202" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 15.9. There is a persistent SSL under isooxyline [<inline-formula><mml:math id="M203" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] <inline-formula><mml:math id="M204" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 10 <inline-formula><mml:math id="M205" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>. Thin white arrows schematically show the diel migration of mesozooplankton. The maximum depth of the diel vertical migration is 120–150 <inline-formula><mml:math id="M206" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>, although some specimens dive to depths of only 80–100 <inline-formula><mml:math id="M207" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>. The slope of the straight arrow pointing downwards corresponds to a diving speed of <inline-formula><mml:math id="M208" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 1.5 <inline-formula><mml:math id="M209" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula>. The ascent is accelerated and reaches values of approximately 2.5 <inline-formula><mml:math id="M210" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">cm</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msup><mml:mi mathvariant="normal">s</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> in the upper 60 <inline-formula><mml:math id="M211" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> depth.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://os.copernicus.org/articles/17/953/2021/os-17-953-2021-f09.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10" specific-use="star"><?xmltex \currentcnt{10}?><?xmltex \def\figurename{Figure}?><label>Figure 10</label><caption><p id="d1e3375">The day–night vertical distribution of <bold>(a)</bold> total mesozooplankton biomass, <bold>(b)</bold> zooplankton composition, and <bold>(c)</bold> temperature (<inline-formula><mml:math id="M212" display="inline"><mml:mi>T</mml:mi></mml:math></inline-formula>) and density (<inline-formula><mml:math id="M213" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) near the mooring site on 1 July (13:30–14:30) and 2 July (02:30–03:30) 2014. Temperature and density profiles <bold>(c)</bold> indicate the selection of sampling strata. CE – <italic>Calanus euxinus</italic>; PE – <italic>Pseudocalanus elongatus</italic>; SC – small crustaceans; NS – <italic>Noctiluca scintillans</italic>; PE – <italic>Parasagitta setosa</italic>; Var – varia.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://os.copernicus.org/articles/17/953/2021/os-17-953-2021-f10.png"/>

        </fig>

      <p id="d1e3427">The two-layered structure was also observed at the end of June–early July 2014 (Fig. 9) and validated by day–night zooplankton sampling on 1 and
2 July (Fig. 10). Deeper zooplankton aggregation was monospecific, consisting only of diapausing <italic>C. euxinus</italic> CVs (Fig. 10b) and formed a thin
layer (5–10 <inline-formula><mml:math id="M214" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> thick). This layer was visible all day and night and was usually located above the isopycnal surface of 15.9. It is clearly
distinguished by the value <inline-formula><mml:math id="M215" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M216" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 1.1 (Fig. 9b). The daytime zooplankton aggregation consisted of three migrating species and their different
developmental stages, <italic>C. euxinus</italic>, CIV–CVIs, <italic>P. elongatus</italic>, CV–CVIs, and <italic>P. setosa</italic>, 14–22 <inline-formula><mml:math id="M217" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula> in size
(Fig. 10b). Since the amplitude of vertical migration is different for different components of this assembly, the daytime deep aggregation reached
35 <inline-formula><mml:math id="M218" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> in thickness. Before sunset, migrating zooplankters began to move upward and at night formed aggregations at depths above 40 <inline-formula><mml:math id="M219" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>
(Fig. 9a) and peaked in the thermocline at 17–25 <inline-formula><mml:math id="M220" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> (Fig. 10a).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11" specific-use="star"><?xmltex \currentcnt{11}?><?xmltex \def\figurename{Figure}?><label>Figure 11</label><caption><p id="d1e3499">The time averages of <inline-formula><mml:math id="M221" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> and [<inline-formula><mml:math id="M222" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] for the daytime of 1 July 2014 (red) and the nighttime of 2 July 2014 (blue), when net sampling (Fig. 10) took place. <bold>(a)</bold> The depth profiles of the time averages <inline-formula><mml:math id="M223" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula>. <bold>(b)</bold> The daytime and nighttime averages <inline-formula><mml:math id="M224" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> vs. the specific density, <inline-formula><mml:math id="M225" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. <bold>(c)</bold> Distribution of the daytime and nighttime averages of the dissolved oxygen concentration vs. <inline-formula><mml:math id="M226" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://os.copernicus.org/articles/17/953/2021/os-17-953-2021-f11.png"/>

        </fig>

      <p id="d1e3572">Since migrating zooplankton aggregations were observed in the deep layers only during the daytime, it is worth comparing the daytime average
<inline-formula><mml:math id="M227" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> profile with that for the nighttime (Fig. 11). Such a comparison clearly reveals the deep maximum of <inline-formula><mml:math id="M228" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> at the daytime migration depths of
mesozooplankton at 90–120 <inline-formula><mml:math id="M229" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>, as well as the persistent maximum of the diapause layer within the deeper layer at 125–140 <inline-formula><mml:math id="M230" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>. Notably,
the depths of the persistent SSL change by approximately 5 <inline-formula><mml:math id="M231" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> from night to the daytime, while they completely overlap when considered vs. the
density. Such variations in the depth of the SSL might be linked to inertial oscillations (Ostrovskii et al., 2018).</p>
</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><title>The seasonal variation in mesozooplankton dynamics in relation to dissolved oxygen concentration</title>
      <p id="d1e3621">In Sect. 3.2, it was shown that the mesozooplankton species float on isopycnals in the lower part of the oxycline and in the hypoxic zone. Both
the diapausing aggregations and the daytime aggregations are displaced coherently by near-inertial waves. The deep aggregations of mesozooplankton are
bounded by certain isopycnal surfaces and isooxylines.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F12"><?xmltex \currentcnt{12}?><?xmltex \def\figurename{Figure}?><label>Figure 12</label><caption><p id="d1e3626"><bold>(a)</bold> Example of the monthly long time series of the vertical profiles of the directional acoustic backscatter ratio <inline-formula><mml:math id="M232" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> for November 2019 (in total 960 profiles from the moored profiler survey). The upper and lower black lines are isooxylines of 50 and 10 <inline-formula><mml:math id="M233" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>, respectively. The white line indicates isopycnal  <inline-formula><mml:math id="M234" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M235" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 15.9. <bold>(b)</bold> Evolution of the dissolved oxygen at the profiler mooring site in November 2019. The colored lines indicate the following: the depths of the isopycnals  <inline-formula><mml:math id="M236" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M237" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 14 and 15.9 (top and bottom white lines); the depth of the temperature minimum (green line); and [<inline-formula><mml:math id="M238" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] <inline-formula><mml:math id="M239" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 50 and 10 <inline-formula><mml:math id="M240" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> (blue lines). The inset shows the diagram of the concentration of dissolved oxygen vs. the potential density, [<inline-formula><mml:math id="M241" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] <inline-formula><mml:math id="M242" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M243" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, plotted from the moored profiler data of November 2019. In this example, as well as for other observational periods, the concentration of dissolved oxygen deviates very little from isopycnal surfaces in the lower part of the oxycline where [<inline-formula><mml:math id="M244" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] <inline-formula><mml:math id="M245" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 200 <inline-formula><mml:math id="M246" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>.</p></caption>
          <?xmltex \igopts{width=241.848425pt}?><graphic xlink:href="https://os.copernicus.org/articles/17/953/2021/os-17-953-2021-f12.png"/>

        </fig>

      <p id="d1e3780">Since the oxygen stratification strongly depends on the density stratification in the pycnocline (e.g., Vinogradov and Nalbandov, 1990; Codispoti,
et al., 1991; Konovalov et al., 2005; see also example in Fig. 12), it becomes possible to switch from the depth profiles of the directional acoustic
backscatter ratio <inline-formula><mml:math id="M247" display="inline"><mml:mrow><mml:mi>R</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, where <inline-formula><mml:math id="M248" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> is the depth, to the <inline-formula><mml:math id="M249" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula>([<inline-formula><mml:math id="M250" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>]) profiles to investigate the seasonal changes of the sound-scattering
mesozooplankton layers in terms of <inline-formula><mml:math id="M251" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> vs. [<inline-formula><mml:math id="M252" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>].</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F13"><?xmltex \currentcnt{13}?><?xmltex \def\figurename{Figure}?><label>Figure 13</label><caption><p id="d1e3844">Example profiles of the daytime and nighttime averages <inline-formula><mml:math id="M253" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi>R</mml:mi><mml:mo>(</mml:mo><mml:mo>[</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mo>]</mml:mo><mml:mo>)</mml:mo><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> in November 2019. The inset shows the same plots with the <inline-formula><mml:math id="M254" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> axis drawn logarithmically to reflect the lower parts of the profiles (the hypoxic zone) in more detail.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://os.copernicus.org/articles/17/953/2021/os-17-953-2021-f13.png"/>

        </fig>

      <p id="d1e3886">The average monthly profiles of <inline-formula><mml:math id="M255" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula>([<inline-formula><mml:math id="M256" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>]) were constructed from <inline-formula><mml:math id="M257" display="inline"><mml:mrow><mml:mi>R</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and [<inline-formula><mml:math id="M258" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>](<inline-formula><mml:math id="M259" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula>) data for every month when the data were
available. To compute the averages, the daytime was defined as a period beginning 2 <inline-formula><mml:math id="M260" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula> after the local time of sunrise (at a given date) and
ending 2 <inline-formula><mml:math id="M261" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula> before sunset. The nighttime was defined as a period beginning 1 <inline-formula><mml:math id="M262" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula> after sunset and ending 1 <inline-formula><mml:math id="M263" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula> before
sunrise. Example plots of the average profiles <inline-formula><mml:math id="M264" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi>R</mml:mi><mml:mo>(</mml:mo><mml:mo>[</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mo>]</mml:mo><mml:mo>)</mml:mo><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> computed as arithmetic and bootstrap mean values along with 95 %
bootstrap confidence intervals are shown for November 2019 in Fig. 13. In the hypoxic zone, the average values <inline-formula><mml:math id="M265" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi>R</mml:mi><mml:mo>(</mml:mo><mml:mo>[</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mo>]</mml:mo><mml:mo>)</mml:mo><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> for
the daytime are significantly higher than those for the nighttime. The daytime averages <inline-formula><mml:math id="M266" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi>R</mml:mi><mml:mo>(</mml:mo><mml:mo>[</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mo>]</mml:mo><mml:mo>)</mml:mo><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M267" display="inline"><mml:mo>&gt;</mml:mo></mml:math></inline-formula> 1.06 were in the range
of [<inline-formula><mml:math id="M268" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] <inline-formula><mml:math id="M269" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 9–40 <inline-formula><mml:math id="M270" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> in November 2019.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F14" specific-use="star"><?xmltex \currentcnt{14}?><?xmltex \def\figurename{Figure}?><label>Figure 14</label><caption><p id="d1e4088">Top – the monthly averaged profiles of <inline-formula><mml:math id="M271" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi>R</mml:mi><mml:mo>(</mml:mo><mml:mo>[</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mo>]</mml:mo><mml:mo>)</mml:mo><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> for the daytime over the upper part of the continental slope near Gelendzhik in the NE Black Sea. Bottom – the same for the nighttime.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://os.copernicus.org/articles/17/953/2021/os-17-953-2021-f14.png"/>

        </fig>

      <p id="d1e4123">The average monthly <inline-formula><mml:math id="M272" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi>R</mml:mi><mml:mo>(</mml:mo><mml:mo>[</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mo>]</mml:mo><mml:mo>)</mml:mo><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> profiles show the seasonal evolution of the mesozooplankton distribution (Fig. 14). The<?pagebreak page964?> SSLs are
barely discernible in January. One can note some activity in the upper part of the oxycline in February. Although we unfortunately do not have data
for March, in April, two peaks appear in the <inline-formula><mml:math id="M273" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi>R</mml:mi><mml:mo>(</mml:mo><mml:mo>[</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mo>]</mml:mo><mml:mo>)</mml:mo><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> profiles in the layers where the concentration of dissolved oxygen is
25–60 <inline-formula><mml:math id="M274" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> and 4–9 <inline-formula><mml:math id="M275" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>. These maxima correspond to the daytime mesozooplankton aggregations and the diapause layer,
respectively. The upper maximum of <inline-formula><mml:math id="M276" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi>R</mml:mi><mml:mo>(</mml:mo><mml:mo>[</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mo>]</mml:mo><mml:mo>)</mml:mo><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula>, which corresponds to the daytime aggregations of mesozooplankton, may weaken in
June–July. However, it becomes stronger again at the end of summer and in autumn. The largest value for this maximum over the entire observation
period <inline-formula><mml:math id="M277" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi>R</mml:mi><mml:mo>(</mml:mo><mml:mo>[</mml:mo><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mo>]</mml:mo><mml:mo>)</mml:mo><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M278" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 1.18 is observed in October. At that time, the maximum shifts into the layer where [<inline-formula><mml:math id="M279" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] is
10–25 <inline-formula><mml:math id="M280" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>. In December 2019, this peak was between the 10 and 30 <inline-formula><mml:math id="M281" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> isooxylines.</p>
      <p id="d1e4289">The maximum of diapause mesozooplankton was strongest in May and July 2020, reaching almost 1.2 at [<inline-formula><mml:math id="M282" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] <inline-formula><mml:math id="M283" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 5–8 <inline-formula><mml:math id="M284" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>. In August,
the diapause mesozooplankton<?pagebreak page965?> layer shifts in the lower part of the suboxic zone where [<inline-formula><mml:math id="M285" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] <inline-formula><mml:math id="M286" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 3–7 <inline-formula><mml:math id="M287" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>. It becomes substantially
weaker in September. In October, this layer degrades further. In November, it tends to disappear.</p>
</sec>
</sec>
<sec id="Ch1.S4">
  <label>4</label><title>Discussion</title>
<sec id="Ch1.S4.SS1">
  <label>4.1</label><title>Visualization of the sound-scattering mesozooplankton aggregations</title>
      <?pagebreak page968?><p id="d1e4365">Previously, acoustic measurements at a frequency of 2 <inline-formula><mml:math id="M288" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">MHz</mml:mi></mml:mrow></mml:math></inline-formula> were not considered a tool for observations of the mesozooplankton SSLs in the sea due to
the limited range of soundings. However, with the advent of ocean profilers with acoustic Doppler current meters, such as the Nortek Aquadopp, it has
become possible to obtain the depth profiles of the volume scattering strength at 2 <inline-formula><mml:math id="M289" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">MHz</mml:mi></mml:mrow></mml:math></inline-formula> frequency in the entire water column and to study the vertical
distribution of zooplankton, such as those in the Black Sea (Ostrovskii and Zatsepin, 2011; Pezacki et al., 2017). Acoustic sounding of
mesozooplankton at two angles is made possible using the side-looking head of the Nortek Aquadopp instrument. The combination of horizontal and
tilted beam signals allows, on the one hand, the patches of particles to be eliminated and the background scattering level of the echogram to be equalized and,
on the other hand, the preferred orientation of mesozooplankton species migrating through the oxycline to be determined. Earlier, Stanton and Chu (2000)
reproduced the influence of the orientation of a 3 mm calanoid copepod (modeled as a high-resolution approximation of an animal profile) on the
acoustic target strength at 2 <inline-formula><mml:math id="M290" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">MHz</mml:mi></mml:mrow></mml:math></inline-formula> with respect to an incident sonar beam. The reduction was found to be 5 %–15 % when copepod orientation was
shifted from 0<inline-formula><mml:math id="M291" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> (broadside incidence) to 30–60<inline-formula><mml:math id="M292" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>. Benfield et al. (2000) carried out field observations using the Video Plankton
Recorder on George Bank and showed that most <italic>Calanus finmarchicus</italic> (75 %) in the depth range of 10–70 <inline-formula><mml:math id="M293" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> were within
<inline-formula><mml:math id="M294" display="inline"><mml:mo>±</mml:mo></mml:math></inline-formula> 30<inline-formula><mml:math id="M295" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> of the prosome-up or prosome-down orientation. It was suggested that one reason for the behavior underlying the head-up orientation
pattern might be due to the predator avoidance strategy aimed at reducing the conspicuousness of <italic>C. finmarchicus</italic> when viewed from above. Such
individuals would present a significantly reduced cross-sectional area to an echo-sounder's transducer with correspondingly diminished target
strength. It was concluded that it is necessary to know how the orientation of individuals changes with depth to correctly account for the biomass of
mesozooplankton. Experiments using a multiple-angle acoustic receiver array on live copepods and mysids in a laboratory tank showed that it is
possible to use the scattered acoustic signal to distinguish among zooplankton taxa (Roberts and Jaffe, 2008). Reflections in the frequency range from
1.5 to 2.5 <inline-formula><mml:math id="M296" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">MHz</mml:mi></mml:mrow></mml:math></inline-formula> were recorded from untethered 1–4 <inline-formula><mml:math id="M297" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula> calanoid copepods and 8–12 <inline-formula><mml:math id="M298" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula> mysids over an angular range of
0–47<inline-formula><mml:math id="M299" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>. That study demonstrated the utility of a multiple-angle acoustic array for zooplankton identification.</p>
      <p id="d1e4475">To distinguish the SSLs against the background patterns of vertical flow of settling particles and to study the orientation of zooplankton species, we
propose a simple method for the processing of ultrasound sensing data at three angles. This acoustic three-beam geometry provides a partial pragmatic
solution for the quest towards the multiple-angle scatter measurements suggested by models (Stanton and Chu, 2000; Roberts and Jaffe, 2007) and
laboratory experiments (Roberts and Jaffe, 2008). Since the late 1990s, researchers' efforts have been focused on creating multichannel instruments to
measure acoustic backscatter (volume scattering strength) at several frequencies, which contain information about the size composition of the
scatterers, since different frequencies bounce off objects of different sizes (Wiebe et al., 2002; Smeti et al., 2015). Multichannel instruments in
conjunction with video cameras are fairly expensive systems that are used for the identification of mesozooplankton in its natural habitat. Plausibly,
a multichannel three-angle system featuring several relatively cheap short-range three-beam acoustic units each operating at an individual frequency when
installed on a vertically profiling carrier would be a very effective tool for visualizing zooplankton aggregations.</p>
</sec>
<sec id="Ch1.S4.SS2">
  <label>4.2</label><title>The SSLs validated from the stratified net sampling</title>
      <p id="d1e4486">Comparison of the Nortek Aquadopp acoustic backscatter observations with the data obtained by stratified zooplankton sampling showed good agreement of
the features of the diel vertical distribution of zooplankton. This was made possible by sampling narrow depth strata (10–15 <inline-formula><mml:math id="M300" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> layers)
targeting deep-water aggregations visualized on the echograms. The two-layered structure of the aggregations seen on echograms and <inline-formula><mml:math id="M301" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> graphs in the
daytime (Figs. 3, 7, and 9) reflected the species composition of zooplankton in these layers (Figs. 4, 8, and 10). The deepest layer bounded by
isopycnals 15.9 and 15.7 was visible in the suboxic zone all day and night and was formed by diapausing CV <italic>Calanus euxinus</italic>. To some extent,
this monospecific layer was contaminated by crustacean exuviae and carcasses, spent females, and zooplankters' remains sinking from the upper layers
and apparently retained on the density gradient. The existence of a nonmigrating diapausing stock located in the suboxic layer from mid-spring to
mid-autumn is confirmed by observations from submersible <italic>Argus</italic> (Vinogradov et al., 1985; Flint 1989), by high vertical resolution sampling with
150 <inline-formula><mml:math id="M302" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">L</mml:mi></mml:mrow></mml:math></inline-formula> water bottles (Vinogradov et al., 1992), and by zooplankton net sampling (Arashkevich et al., 1998; Besiktepe, 2001; Svetlichny et al.,
2009). However, for some unknown reasons, this nonmigrating layer was not detected by shipborne echo sounders at frequencies of 38–200 <inline-formula><mml:math id="M303" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">kHz</mml:mi></mml:mrow></mml:math></inline-formula>
(Erkan and Gücü, 1998; Mutlu, 2003, 2007; Stefanova and Marinova, 2015; Sakınan and Gücü, 2016), unlike our data obtained by
Aquadopp at a frequency of 2 <inline-formula><mml:math id="M304" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">MHz</mml:mi></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e4535">The inclusion of diapause (or dormant stage) in the life cycle of all Calanidae species living in high-latitude and temperate environments is well
known (e.g., see review in Baumgartner and Tarrant, 2017). Having accumulated a large amount of lipids, diapausing copepods descend into deeper ocean
layers, where they can exist for several months at the expense of energy reserves. Decreased metabolic rate and developmental delay are characteristic
features of diapausing copepods. In the Black Sea, a decrease in the metabolic rate in diapausing <italic>C. euxinus</italic> is caused not only by internal
physiological reasons, but also by hypoxia in their dormant layer. The oxygen consumption rate in diapausing CV <italic>C. euxinus</italic> in hypoxia
decreases by almost an order of magnitude, and the rate of ammonia excretion decreases 6 times compared with those in their active counterparts in
normoxia (Svetlichny et al., 1998).</p>
      <p id="d1e4544">During the daytime, the upper SSL mostly located above <inline-formula><mml:math id="M305" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">Θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M306" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 15.7 consisted of four species, copepods <italic>C. euxinus</italic> and
<italic>Pseudocalanus elongatus</italic>, chaetognaths <italic>Parasagitta setosa</italic>, and ctenophores <italic>Pleurobrachia pileus</italic>; the latter had a negligible
contribution to dry biomass. This assembly had a wide range of body lengths from approximately 1 <inline-formula><mml:math id="M307" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula> in <italic>P. elongatus</italic> to 22 <inline-formula><mml:math id="M308" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">mm</mml:mi></mml:mrow></mml:math></inline-formula>
in <italic>P. setosa</italic>. The different species had different swimming speeds. It was also possible that these species had different physiological
tolerances to oxygen deficiency. This confirms earlier observations from the manned submersible, which showed that the daytime aggregation of
migrating zooplankton had a layered structure: the lower layer was formed by chaetognaths, whereas the older stages of <italic>C. euxinus</italic> were
located above, and ctenophores inhabited the upper part of the aggregation (Vinogradov et al., 1985; Flint, 1989). Furthermore, the different
developmental stages of copepods <italic>C. euxinus</italic> and <italic>P. elongatus</italic> occupied different depths, deepening as their size increased (Morozov
et al., 2019).</p>
      <p id="d1e4610">In the evening, approximately 2 h before sunset, zooplankters begin to ascend to the upper layers, where they spend all the dark hours
concentrating in the thermocline layer and below it. In this layer, while feeding, they move in different directions and are oriented randomly
(Kiørboe et al., 2009), so they cannot be discernible in the <inline-formula><mml:math id="M309" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> graphs. According to our data, cold-water herbivorous <italic>C. euxinus</italic> and
<italic>P. elongatus</italic> only occasionally ascend into the warm UML, mainly inhabiting colder layers rich in phytoplankton (see also the supplement to
the paper by Morozov et al., 2019). Predator chaetognaths <italic>P. setosa</italic> move upward following copepods, their main prey (Drits and Utkina,
1988). The time of zooplankton migration clearly visible on the echograms is confirmed by the results of net sampling and is consistent with other
published data (see for reference the Supplement of Morozov et al., 2019).</p>
      <?pagebreak page969?><p id="d1e4630">The vertical migration of zooplankton can increase the vertical flow of carbon and thus contribute to the functioning of the biological pump in the
ocean (Tutasi and  Escribano, 2020). The mesozooplankton that feed at the surface but metabolize and excrete
at depth contribute to the transport of organic matter; more quantitatively, this contribution is estimated to be between approximately
10 %–50 % of the local sinking flux of organic particles (Bianchi et al., 2013, and references therein).</p>
      <p id="d1e4633">In the lower part of the oxic zone, the vertical displacements of SSLs coincide with the oscillations of isopycnal surfaces (Figs. 5 and 10). The
dissolved oxygen concentration profile tightly hinges on the density stratification in the Black Sea since both are basically due to vertical mixing
processes (e.g., Ostrovskii et al., 2018). Hence, displacements of the SSLs with regard to the oxy-isolines are much smaller than those vs. the
depths. The vertical oscillations with a period of approximately 17 <inline-formula><mml:math id="M310" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula> near the mooring site are due to near-inertial waves (Ostrovskii et al.,
2018). Irregular changes in isopycnal depths occur due to hydrodynamic events, such as individual internal waves, oceanic fronts, and
jets. Occasionally, the isopycnal depth may change by 30–40 <inline-formula><mml:math id="M311" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> within a day (Ostrovskii and Zastsepin, 2016).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F15" specific-use="star"><?xmltex \currentcnt{15}?><?xmltex \def\figurename{Figure}?><label>Figure 15</label><caption><p id="d1e4654">The suboxic boundary depth ([<inline-formula><mml:math id="M312" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] <inline-formula><mml:math id="M313" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 10 <inline-formula><mml:math id="M314" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>) as observed by the moored profiler in 2016, 2019, 2020, and 2021.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://os.copernicus.org/articles/17/953/2021/os-17-953-2021-f15.png"/>

        </fig>

      <p id="d1e4691">It is unlikely that copepods maintain their positions on certain isopycnal surfaces by swimming, as displacements of such large amplitudes by tens of
meters require an additional depletion of energy reserves. A more beneficial strategy would be to adjust their buoyancy to neutral. Having neutral
buoyancy in the hypoxic zone, the copepods would not need to spend much additional energy floating up and down following crests and troughs of
internal waves while avoiding entrainment into the suboxic layer. Indeed, direct observations from manned submersibles revealed a quiescent behavior
of diapausing copepods and their slow response to light and noise produced by underwater vehicles, both in the Santa Barbara Basin (Alldredge et al.,
1984) and in the Black Sea (Mikhail Flint, personal communication, 2020). Neutral buoyancy has
been hypothesized to be regulated by changes in lipid composition (Visser and Jónasdóttir, 1999); however, Campbell and Dower (2003) argued
that this buoyancy regulation mechanism is inherently unstable because wax esters are more compressible than seawater. An alternative mechanism for
buoyancy regulation in diapausing copepods that involves the replacement of heavy ions with lighter ammonium ions in hemolymph has been proposed by
Sartoris et al. (2010) by analogy with other invertebrates. Later, Schründer et al. (2013) found high concentrations of ammonium ions in the
hemolymph of a diapausing species, <italic>Calanoides acutus</italic>, and suggested that these copepods could achieve neutral buoyancy through their
biochemical body composition without swimming movements. This mechanism obviously would better explain the observed phenomenon of diapausing copepod
movement synchronized with the displacements of the isopycnal surfaces in the Black Sea.</p>
</sec>
<sec id="Ch1.S4.SS3">
  <label>4.3</label><title>Seasonal variations of the deep mesozooplankton SSLs</title>
      <p id="d1e4705">For most of the year, from April to October, the sound-scattering profiles in the deeper part of the oxic zone were bimodal during the day (Fig. 14),
reflecting the vertical distributions of two different zooplankton cohorts, migrating and diapausing. The oxygen concentration at which the maximum
backscattering signal from migrating zooplankton was observed decreased throughout the year, from ca. 70–90 <inline-formula><mml:math id="M315" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> in January–February to
30–40 <inline-formula><mml:math id="M316" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> in April–August and to 15–20 <inline-formula><mml:math id="M317" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> in September–December. Two explanations can be considered for the seasonal shift
in the preferred oxygen concentration in these zooplankters. On the one hand, this shift can be attributed to the deepening of the suboxic layer in
January–February, followed by gradual shallowing from April onwards (Fig. 15). If we assume that the depth of daytime zooplankton aggregation depends
to a large extent on the species-specific migration amplitude, then with a deepened suboxic layer ([<inline-formula><mml:math id="M318" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] <inline-formula><mml:math id="M319" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 10 <inline-formula><mml:math id="M320" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>), the migrating
zooplankton will reach shallower depths, and its aggregation will be at a higher oxygen concentration. Conversely, with a shoaling suboxic layer,
zooplankton localize at lower oxygen levels.</p>
      <p id="d1e4767">This assumption is consistent with the data of Vinogradov et al. (1992), who found the daytime aggregation maximum of migrating CV and female
<italic>C. euxinus</italic> at an oxygen concentration of 18 <inline-formula><mml:math id="M321" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> when the suboxic layer was at a depth of 110 <inline-formula><mml:math id="M322" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> and at
[<inline-formula><mml:math id="M323" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] <inline-formula><mml:math id="M324" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 36 <inline-formula><mml:math id="M325" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> when the suboxic layer was at a depth below 170 <inline-formula><mml:math id="M326" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>. This suggests that the trade-off between the additional
metabolic cost for extended swimming and metabolism reduction caused by low oxygen is in favor of a decrease in the diel migration amplitude of
<italic>C. euxinus</italic>. This differs from observations (Wishner et al., 2020) on the migration of <italic>Lucicutia hulsemannae</italic> in the eastern tropical
North Pacific, where this species changes its daytime location in response to changes in the depth of the oxygen minimum zones (OMZs). For example, at
the lower oxycline, the depth of maximum abundance for <italic>L. hulsemannae</italic> shifted from <inline-formula><mml:math id="M327" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 600 to <inline-formula><mml:math id="M328" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 800 <inline-formula><mml:math id="M329" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> in an expanded OMZ
compared to a thinner OMZ but remained at similar low oxygen levels in both situations. <italic>L. hulsemannae</italic> is an example of a “hypoxiphilic”
species (Wishner et al., 2020). However, unlike <italic>Calanus</italic> spp., <italic>L. hulsemannae</italic> is a strong swimmer, capable of diel vertical migration
with amplitudes as large as approximately 1000 <inline-formula><mml:math id="M330" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>.</p>
      <?pagebreak page970?><p id="d1e4877">Another explanation for the seasonal shift in the depth of the daytime aggregation in the Black Sea is the change in taxonomic and age composition of
the migrating cohort. A decreasing/increasing share of strong/weak swimmers with different tolerances to oxygen deficiency may lead to a shift in the
depth of daytime aggregation. The oxygen concentration was in the range of 15–60 <inline-formula><mml:math id="M331" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> in the layer of daytime aggregation of migrating
species in the Black Sea. Similarly, the vertical distribution of migrating CV and adult <italic>Calanus chilensis</italic> off northern Peru was
characterized by high abundance in hypoxic waters at oxygen concentrations between 5 and 50 <inline-formula><mml:math id="M332" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> (Hirche et al., 2014).</p>
      <p id="d1e4903">Based on our data, a diapausing cohort of <italic>C. euxinus</italic> appeared in April and terminated in November (Fig. 14). According to Vinogradov
et al. (1985) and Svetlichny et al. (2009), the diapausing stage of <italic>C. euxinus</italic> was not found in the Black Sea in March. Hence, it is assumed
that the diapausing stock is formed in April, when the offspring of the first generation of <italic>C. euxinus</italic> develop into the CV and accumulate
sufficient lipid reserves. The energy reserve and a decrease in metabolic rate allow diapausing CV to exist without food for 7 months in the
suboxic zone (Vinogradov et al., 1992), which agrees with our observation of the diapause duration. The suboxic zone provides a refuge from large
visual predators, which generally need higher oxygen concentrations (e.g., Bianchi et al., 2013).</p>
      <p id="d1e4916">The diapausing layer is bound by 3 and 10 <inline-formula><mml:math id="M333" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> and peaks at 5–7 <inline-formula><mml:math id="M334" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> oxygen. Earlier, the oxygen survival threshold for
diapausing <italic>C. euxinus</italic> was determined experimentally at [<inline-formula><mml:math id="M335" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] <inline-formula><mml:math id="M336" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 1.8 <inline-formula><mml:math id="M337" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> (Vinogradov et al., 1992). Physiological
tolerance for hypoxia in diapausing <italic>C. euxinus</italic> resembles that reported for diapausing stage CV <italic>Calanus pacificus</italic>, which formed
narrow dense aggregations at an oxygen concentration of 6.25 <inline-formula><mml:math id="M338" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> in the Santa Barbara Basin (Alldredge et al., 1984). The diapausing
<italic>C. pacificus</italic> at a depth of 450 <inline-formula><mml:math id="M339" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> was characterized by quiescent behavior, low laminarinase activity (as a proxy of feeding), and high
lipid storage.</p>
      <p id="d1e4998">Similar tolerance for hypoxia was reported for diapausing <italic>Eucalanus inermis</italic>. Based on lactate dehydrogenase activity in the deep-dwelling CV
and female <italic>E. inermis</italic>, their oxygen tolerance threshold was defined at the level of 4.47 <inline-formula><mml:math id="M340" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> in the Pacific Ocean (Flint et al.,
1991). Wishner et al. (2020) found a monospecific aggregation of <italic>E. inermis</italic> diapausing at extremely low oxygen, 1.0–5.7 <inline-formula><mml:math id="M341" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>, in
the eastern tropical North Pacific. In the Black Sea, the diapause depth is directly associated with certain density surfaces and consequently with a
specific concentration of oxygen. From April to November, the isopycnal surfaces bounded by the suboxic layer move upward from depths of 130–160 to
110–140 <inline-formula><mml:math id="M342" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>. On this seasonal trend, the superimposed surfaces exhibit strong variations up to 60 <inline-formula><mml:math id="M343" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> in amplitude at timescales from
17 <inline-formula><mml:math id="M344" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">h</mml:mi></mml:mrow></mml:math></inline-formula> to several days (Fig. 15). Diapause layers varied in depth along with isopycnal oscillations, allowing the copepods to remain in a
constant-low-oxygen habitat.</p>
</sec>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <label>5</label><title>Conclusions</title>
      <?pagebreak page971?><p id="d1e5065">The key to using high-frequency sound in this study is to deploy the acoustic transducer in a manner that gets it sufficiently close to the animal
aggregations of interest. To visualize the mesozooplankton SSLs over the echogram with background vertical flows of settling particles, we take
advantage of the differences in acoustic scattering that is isotropic on the settling particles and anisotropic on zooplankton species due to the
elongated shape of the animals because their side view area is larger than the head-view area or the tail-view area. The calculations of the ratio <inline-formula><mml:math id="M345" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula>
of the volume scattering strength of the horizontal acoustic beams to the volume scattering strength of the slanted beam allow visualizations of the
mesozooplankton aggregations of the specimen to be oriented vertically. This three-beam approach enhances the capability of underwater ultrasound
sensing to observe the mesozooplankton layers.
<?xmltex \hack{\newpage}?>
Linking the values of <inline-formula><mml:math id="M346" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> to oxygen concentration enables us to derive the monthly averages from many profiles despite the fluctuations in vertical
distribution. The analysis of the oxygen-deficient zone allows us to describe the seasonal evolution of diel zooplankton migrations, to determine the
preferred oxygen regime for migrating and nonmigrating zooplankters, and to define the timing of formation, termination, and duration of diapause in CV
<italic>Calanus euxinus</italic> in the Black Sea.</p>
      <p id="d1e5087">Aggregations of vertically migrating zooplankton, consisting mainly of the older copepodite stages of <italic>C. euxinus</italic> and <italic>Pseudocalanus elongatus</italic> and large-sized chaetognaths <italic>Parasagitta setosa</italic>, are observed within the hypoxic zone during the daytime and mostly in the
thermocline layer at night. The volume scattering strength in migrating SSL in the hypoxic layer varies seasonally, with a minimum in winter and a
maximum in late summer–early autumn. The location of this SSL also changes in relation to the oxygen concentration in the range [<inline-formula><mml:math id="M347" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] between
10 and 100 <inline-formula><mml:math id="M348" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>. Roughly, the deeper the suboxic zone is located, the higher the oxygen concentration at the layers where the migrating
species are aggregated. These variations are hypothesized to address seasonal changes in the taxonomic and age composition of migratory
zooplankton. The maximum depth of zooplankton vertical diel migration is limited by the upper boundary of the suboxic zone
([<inline-formula><mml:math id="M349" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] <inline-formula><mml:math id="M350" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 10 <inline-formula><mml:math id="M351" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>).</p>
      <p id="d1e5149">The nonmigrating diapause SSL is observed at low [<inline-formula><mml:math id="M352" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] <inline-formula><mml:math id="M353" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 3–10 <inline-formula><mml:math id="M354" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> from the beginning of April to the end of October, suggesting
a 7-month duration of diapause in <italic>C. euxinus</italic>. This persistent layer does not exceed 5–10 <inline-formula><mml:math id="M355" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula> in thickness. The volume scattering
strength in this monospecific layer may exceed that in the overlying daytime SSL, apparently indicating the tighter aggregation of diapausing copepods
compared to the aggregations of multispecies migrating zooplankton. Diapause layers vary in depth along with isopycnal oscillations, allowing copepods
to remain in a constant-low-oxygen habitat.</p>
      <p id="d1e5191">Fluctuations of the SSLs are subject to interannual changes. It is necessary to maintain moored profiling acoustic observatories in the Black Sea for
a detailed analysis of year-to-year variability.</p><?xmltex \hack{\clearpage}?>
</sec>

      
      </body>
    <back><app-group>

<?pagebreak page972?><app id="App1.Ch1.S1">
  <?xmltex \currentcnt{A}?><label>Appendix A</label><title>Is the mesozooplankton specimens' vertical orientation tilted in the deep aggregations?</title>
      <p id="d1e5206">In the deep aggregations, the mesozooplankton species, while being oriented vertically in general, might be tilted with respect to the vertical
axis. Furthermore the specimens are probably occasionally tilted; i.e., their azimuth angles are distrusted randomly, so that the broadside incident
angles of the horizontal acoustic beams would dominate the acoustic backscattering data. Since the horizontal beams of the Nortek Aquadopp instrument
are orthogonal, one can calculate the standard deviation of the ensemble of the ratio of the acoustic backscatter of horizontal beams <inline-formula><mml:math id="M356" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>/<inline-formula><mml:math id="M357" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
to check for the possibility of a tilt. There is a high probability that <inline-formula><mml:math id="M358" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>〉</mml:mo><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula> for the aggregations of tilted species,
while the standard deviation should be greater than 0. The persistent SSL caused by the diapausing mesozooplankton appears on the spring and summer
profiles of <inline-formula><mml:math id="M359" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula>([<inline-formula><mml:math id="M360" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>]) as the maximum in the layer where [<inline-formula><mml:math id="M361" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>] <inline-formula><mml:math id="M362" display="inline"><mml:mo>&lt;</mml:mo></mml:math></inline-formula> 10 <inline-formula><mml:math id="M363" display="inline"><mml:mrow class="unit"><mml:mi mathvariant="normal">µ</mml:mi><mml:mi mathvariant="normal">m</mml:mi></mml:mrow></mml:math></inline-formula>, i.e., in the suboxic layer. The orientation of the
mesozooplankton species in this layer is mostly vertical but tends to be slightly more tilted than in the daytime aggregations of migrating
mesozooplankton, as indicated by the <inline-formula><mml:math id="M364" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>/<inline-formula><mml:math id="M365" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> ratio (see example for July 2019 in Fig. A1).</p>

      <?xmltex \floatpos{h!}?><fig id="App1.Ch1.S1.F16"><?xmltex \currentcnt{A1}?><?xmltex \def\figurename{Figure}?><label>Figure A1</label><caption><p id="d1e5328">Monthly averages of the depth profiles of the acoustic backscattering amplitude ratio <inline-formula><mml:math id="M366" display="inline"><mml:mrow><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>/</mml:mo><mml:msub><mml:mi>A</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> for the time series of the daytime (solid red line) and nighttime (blue solid line) data in July 2019. Dotted lines indicate the values of the standard deviations from the means.</p></caption>
        <?xmltex \hack{\hsize\textwidth}?>
        <?xmltex \igopts{width=199.169291pt}?><graphic xlink:href="https://os.copernicus.org/articles/17/953/2021/os-17-953-2021-f16.png"/>

      </fig>

<?xmltex \hack{\clearpage}?>
</app>
  </app-group><notes notes-type="dataavailability"><title>Data availability</title>

      <p id="d1e5363">Underlying research data can be accessed via <ext-link xlink:href="https://doi.org/10.13140/RG.2.2.28470.73285" ext-link-type="DOI">10.13140/RG.2.2.28470.73285</ext-link> (Ostrovskii et al., 2020) and <ext-link xlink:href="https://doi.org/10.13140/RG.2.2.27548.62084" ext-link-type="DOI">10.13140/RG.2.2.27548.62084</ext-link> (Solovyev et al., 2021).</p>
  </notes><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d1e5375">AGO analyzed the moored profiler Aqualog data and wrote the parts of the paper related to the profiler mooring measurements and data analysis. EGA analyzed the net zooplankton data and wrote the parts of the paper related to the zooplankton distribution analysis. VAS deployed the mooring and handled the profiler sensors. DAS is a design engineer of the profiler, who also maintained the profiler.</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d1e5381">The authors declare that they have no conflict of interest.</p>
  </notes><notes notes-type="disclaimer"><title>Disclaimer</title>

      <p id="d1e5387">Publisher's note: Copernicus Publications remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e5393">We thank Andrey Zatsepin for promoting the moored profiler measurement program in the Black Sea. The Black Sea field study is carried out in the framework of Russian Ministry of Science and High Education, assignment no. 0128-2021-0016. The net sampling data analysis is supported by the Russian Science Foundation, grant no. 20-17-00167. The Aqualog profiler data processing and analysis are supported via grant nos. 19-05-00459 and 19-45-230012 by the Russian Fund for Basic Research and Krasnodarsky Kray Ministry of Science, Education, and Youth Policy. We are grateful to the editor and three anonymous referees for helpful comments on this paper.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d1e5398">This research has been supported by the Ministry of Science and Higher Education of the Russian Federation (grant no. 0128-2021-0016) and the Russian Foundation for Basic Research (grant nos. 19-05-00459 and 19-45-230012).</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d1e5404">This paper was edited by Mario Hoppema and reviewed by four anonymous referees.</p>
  </notes><ref-list>
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    <!--<article-title-html>Seasonal variation of the sound-scattering zooplankton vertical distribution in the oxygen-deficient waters of the NE Black Sea</article-title-html>
<abstract-html><p>At the northeastern Black Sea research site, observations from 2010–2020 allowed us to study the dynamics and evolution of the vertical
distribution of mesozooplankton in oxygen-deficient conditions via analysis of sound-scattering layers associated with dominant zooplankton
aggregations. The data were obtained with profiler mooring and zooplankton net sampling. The profiler was equipped with an acoustic Doppler current
meter, a conductivity–temperature–depth probe, and fast sensors for the concentration of dissolved oxygen [O<sub>2</sub>]. The acoustic instrument
conducted ultrasound (2&thinsp;MHz) backscatter measurements at three angles while being carried by the profiler through the oxic zone. For the lower
part of the oxycline and the hypoxic zone, the normalized data of three acoustic beams (directional acoustic backscatter ratios, <i>R</i>) indicated
sound-scattering mesozooplankton aggregations, which were defined by zooplankton taxonomic and quantitative characteristics based on stratified net
sampling at the mooring site. The time series of  ∼ &thinsp;14&thinsp;000 <i>R</i> profiles as a function of [O<sub>2</sub>] at depths where
[O<sub>2</sub>]&thinsp; &lt; &thinsp;200&thinsp;µm were analyzed to determine month-to-month variations of the sound-scattering layers. From spring to early
autumn, there were two sound-scattering maxima corresponding to (1) daytime aggregations, mainly formed by diel-vertical-migrating copepods
<i>Calanus euxinus</i> and <i>Pseudocalanus elongatus</i> and chaetognaths <i>Parasagitta setosa</i>, usually at
[O<sub>2</sub>]&thinsp; = &thinsp;15–100&thinsp;µm, and (2) a persistent monospecific layer of the diapausing fifth copepodite stages of <i>C. euxinus</i> in
the suboxic zone at 3&thinsp;µm&thinsp; &lt; &thinsp;[O<sub>2</sub>]&thinsp; &lt; &thinsp;10&thinsp;µm. From late autumn to early winter, no persistent deep
sound-scattering layer was observed. At the end of winter, the acoustic backscatter was basically uniform in the lower part of the oxycline and the
hypoxic zone. The assessment of the seasonal variability of the sound-scattering mesozooplankton layers is important for understanding
biogeochemical processes in oxygen-deficient waters.</p></abstract-html>
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