<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing with OASIS Tables v3.0 20080202//EN" "journalpub-oasis3.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" dtd-version="3.0"><?xmltex \makeatother\@nolinetrue\makeatletter?>
  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">OS</journal-id>
<journal-title-group>
<journal-title>Ocean Science</journal-title>
<abbrev-journal-title abbrev-type="publisher">OS</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Ocean Sci.</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1812-0792</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/os-13-503-2017</article-id><title-group><article-title>Spatial distribution of turbulent mixing in the upper ocean <?xmltex \hack{\newline}?>of the South
China Sea</article-title>
      </title-group><?xmltex \runningtitle{Spatial distribution of turbulent mixing}?><?xmltex \runningauthor{X.-D. Shang et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Shang</surname><given-names>Xiao-Dong</given-names></name>
          <email>xdshang@scsio.ac.cn</email>
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff2">
          <name><surname>Liang</surname><given-names>Chang-Rong</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Chen</surname><given-names>Gui-Ying</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>State Key Laboratory of Tropical Oceanography, South China Sea
Institute of Oceanology, Chinese Academy <?xmltex \hack{\newline}?>of Sciences,
Guangzhou 510301, China</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>University of Chinese Academy of Sciences,
Beijing 100049, China</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Xiao-Dong Shang (xdshang@scsio.ac.cn)</corresp></author-notes><pub-date><day>26</day><month>June</month><year>2017</year></pub-date>
      
      <volume>13</volume>
      <issue>3</issue>
      <fpage>503</fpage><lpage>519</lpage>
      <history>
        <date date-type="received"><day>30</day><month>September</month><year>2016</year></date>
           <date date-type="rev-request"><day>11</day><month>November</month><year>2016</year></date>
           <date date-type="rev-recd"><day>8</day><month>May</month><year>2017</year></date>
           <date date-type="accepted"><day>16</day><month>May</month><year>2017</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under the Creative Commons Attribution 3.0 Unported License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/3.0/">https://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions><self-uri xlink:href="https://os.copernicus.org/articles/.html">This article is available from https://os.copernicus.org/articles/.html</self-uri>
<self-uri xlink:href="https://os.copernicus.org/articles/.pdf">The full text article is available as a PDF file from https://os.copernicus.org/articles/.pdf</self-uri>


      <abstract>
    <p>The spatial distribution of the dissipation rate (<inline-formula><mml:math id="M1" display="inline"><mml:mrow><mml:mi mathvariant="italic">ε</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
and diapycnal diffusivity (<inline-formula><mml:math id="M2" display="inline"><mml:mrow><mml:mi mathvariant="italic">κ</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> in the upper ocean of the South China
Sea (SCS) is presented from a measurement program conducted from 26 April to
23 May 2010. In the vertical distribution, the dissipation rates below the
surface mixed layer were predominantly high in the thermocline where shear
and stratification were strong. In the regional distribution, high
dissipation rates and diapycnal diffusivities were observed in the region to
the west of the Luzon Strait, with an average dissipation rate and diapycnal
diffusivity of 8.3 <inline-formula><mml:math id="M3" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M4" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M5" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and
2.7 <inline-formula><mml:math id="M6" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M7" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M8" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M9" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively, almost 1 order of
magnitude higher than those in the central and southern SCS. In the region to
the west of the Luzon Strait, the water column was characterized by strong
shear and weak stratification. Elevated dissipation rates (<inline-formula><mml:math id="M10" display="inline"><mml:mi mathvariant="italic">ε</mml:mi></mml:math></inline-formula> &gt; 10<inline-formula><mml:math id="M11" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">7</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M12" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and diapycnal diffusivities
(<inline-formula><mml:math id="M13" display="inline"><mml:mi mathvariant="italic">κ</mml:mi></mml:math></inline-formula> &gt; 10<inline-formula><mml:math id="M14" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M15" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M16" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, induced by shear
instability, occurred in the water column. In the central and southern SCS,
the water column was characterized by strong stratification and weak shear
and the turbulent mixing was weak. Internal waves and internal tides
generated near the Luzon Strait are expected to make a dominant contribution
to the strong turbulent mixing and shear in the region to the west of the
Luzon Strait. The observed dissipation rates were found to scale positively
with the shear and stratification, which were consistent with the
MacKinnon–Gregg model used for the continental shelf but different from the
Gregg–Henyey scaling used for the open ocean.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

      <?xmltex \hack{\allowdisplaybreaks}?>
<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>Turbulent mixing is a crucial mechanism that controls the distribution of
nutrients, sediments, freshwater, and pollutants throughout the water column
(Sandstrom and Elliott, 1984). The magnitude and distribution of diapycnal
diffusivity are important for large-scale ocean circulation (Saenko and
Merryfield, 2005). Assuming a balance between vertical advection and vertical
diffusion for tracers, Munk (1966) reported that a global average diapycnal
diffusivity of 10<inline-formula><mml:math id="M17" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M18" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M19" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> is required to maintain gross
oceanic stratification and overturning circulation (Tsujino et al., 2000).
However, diapycnal diffusivity from turbulent mixing in the open ocean
thermocline only ranges from 5 <inline-formula><mml:math id="M20" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M21" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> to
3 <inline-formula><mml:math id="M22" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M23" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M24" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M25" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Gregg, 1998; Polzin et al., 1995).
Therefore, it has been argued that elevated turbulent mixing concentrated
over rough topography (Ledwell et al., 2000; Wu et al., 2011) would aid in
explaining this discrepancy. In the past decade, elevated diapycnal
diffusivities, i.e., <inline-formula><mml:math id="M26" display="inline"><mml:mi>O</mml:mi></mml:math></inline-formula> (10<inline-formula><mml:math id="M27" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M28" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M29" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> or higher, have been
found in mixing hotspots such as seamounts (Carter et al., 2006; Lueck and
Mudge, 1997), ridges (Klymak et al., 2006a; Lee et al., 2006), and canyons
(Carter and Gregg, 2002). However, these elevated mixing events are highly
localized. Whether such topographically enhanced mixing is sufficiently
intense or widespread to significantly increase the basin-wide average
remains unclear. Using a simple averaging scheme, Kunze and Toole (1997)
suggested that topographically induced mixing was insufficient to support a
basin-averaged diffusivity of <inline-formula><mml:math id="M30" display="inline"><mml:mi>O</mml:mi></mml:math></inline-formula> (10<inline-formula><mml:math id="M31" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M32" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M33" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> above a
3000 m depth in the North Pacific.</p>
      <p>Compared with the open ocean, less attention has been given to marginal seas.
In recent years, observations (Tian et al., 2009) indicated that turbulent
mixing in marginal seas could make an important contribution to ocean mixing.
The South China Sea (SCS), one of the largest marginal seas of the Pacific,
connects to the Pacific through the Luzon Strait. Measurements and numerical
simulations (Alford et al., 2015; Chang et al., 2006; Lien et al., 2005)
indicated that energetic internal tides and internal waves generated near the
Luzon Strait propagate into the SCS and facilitate turbulent mixing.
Considerable effort has been put forth to explore the characteristics of
turbulent mixing in the SCS. Using fine-scale parameterization, Tian et
al. (2009) reported a turbulent mixing distribution along a section from the
northern SCS to the Pacific. They found that the diapycnal diffusivity in the
upper 500 m of the northern SCS reached <inline-formula><mml:math id="M34" display="inline"><mml:mi>O</mml:mi></mml:math></inline-formula> (10<inline-formula><mml:math id="M35" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M36" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M37" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>,
almost 1 order of magnitude larger than that in the Pacific. Yang et
al. (2016) explored the turbulent mixing in the SCS with a fine-scale
parameterization and found diapycnal diffusivity in the northern SCS as large
as <inline-formula><mml:math id="M38" display="inline"><mml:mi>O</mml:mi></mml:math></inline-formula> (10<inline-formula><mml:math id="M39" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M40" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M41" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. In addition to these
parameterizations, some direct measurements from microstructure profilers are
also available. A direct observation of turbulent dissipation was reported by
Laurent (2008), who found a dissipation rate as high as
10<inline-formula><mml:math id="M42" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M43" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> over the shelf break of the northern SCS. Lozovatsky
et al. (2013) reported a regional mapping of the averaged dissipation rate in
the upper pycnocline of the northern SCS and found values in the Luzon Strait
as high as 10<inline-formula><mml:math id="M44" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">7</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M45" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. Yang et al. (2014) conducted direct
measurements of turbulence along a section across the continental shelf and
slope in the northern SCS. Their results show that the averaged dissipation
rate over the shelf reached 10<inline-formula><mml:math id="M46" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">7</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M47" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, which is an order of
magnitude larger than that over the slope. There is no doubt that these
studies have greatly aided our knowledge of turbulent mixing in the SCS.
However, the direct microstructure measurements are localized and scattered,
with most of them focusing on the northern SCS. Few microstructure
measurements have been conducted in the central and southern SCS. Where the
strong turbulent mixing takes place in the SCS and what drives the turbulent
mixing are not fully understood. In this work, we present direct
microstructure measurements that cover the upper ocean of the SCS and explore
the features and regimes of the turbulent mixing. Energy sources for the
turbulent mixing are also discussed.</p>
      <p>In addition, there is a lack of studies assessing parameterizations in the
SCS. Fine-scale parameterizations are aimed at reproducing the dissipation
rate in terms of more easily observed or modeled quantities, such as
stratification and shear. Generally, microstructure measurements are fewer
and more difficult than the fine-structure measurements (e.g., CTD and ADCP
measurements), especially microstructure measurements in the deep sea.
Therefore, to study the spatial and temporal distribution of turbulent
mixing, researchers often resort to fine-scale parameterizations (Jing and
Wu, 2010; Tian et al., 2009; Wu et al., 2011). In addition, fine-scale
parameterizations would provide a reference for modelers. Shelf sea models
have success in reproducing the water column structure in seasonally
stratified shelf seas (Holt and Umlauf, 2008; Simpson and Bowers, 1981).
However, models need to calibrate a background mixing level to correctly
predict the water column structure (Rippeth, 2005). The requirement of
calibration reduces the success of models on shelf-wide scales since
differing forcing mechanisms and mixing processes require specific methods
and levels of tuning. This presents a clear challenge to oceanographic
models. Before the water column structure in shelf seas can be modeled
realistically, the distribution of mixing must be established and the major
mixing processes parameterized. Confidence in future predictions is therefore
dependent on an ocean turbulence model that can be validated against observed
mixing or parameterized mixing, but not on the calibration of a background
mixing level. In order to estimate the turbulent mixing without
microstructure measurements, we assess two fine-scale parameterizations with
microstructure data and investigate which one works better and why it works
better. We begin in Sect. 2 with a description of our measurements and
methods. In Sect. 3 we explore the features and regimes of the turbulent
mixing, and assess two fine-scale parameterizations. We discuss the turbulent
mixing and fine-scale parameterizations in Sect. 4. A summary of our results
is presented in Sect. 5.</p>
</sec>
<sec id="Ch1.S2">
  <title>Measurements and methods</title>
      <p>The field experiment was performed from 26 April to 23 May 2010 (local time)
prior to the South China Sea summer monsoon (SCSSM) onset. A total of 82
stations were conducted in the experiment (Fig. 1a). Direct turbulence
measurements were collected with the Turbulence Ocean Microstructure
Acquisition Profiler (TurboMAP). TurboMAP is a quasi-free-falling instrument
that measures turbulent parameters (<inline-formula><mml:math id="M48" display="inline"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>u</mml:mi><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M49" display="inline"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>T</mml:mi><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, bio-optical parameters (in vivo fluorescence and
backscatter), and hydrographic parameters (conductivity, temperature, and
depth; Wolk et al., 2002). TurboMAP carries seven environmental sensors and a
three-axis accelerometer that measures tilt and vibrations. The turbulent
velocity fluctuations are measured with two standard shear probes.
Conductivity (<inline-formula><mml:math id="M50" display="inline"><mml:mrow><mml:mi>C</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and temperature (<inline-formula><mml:math id="M51" display="inline"><mml:mrow><mml:mi>T</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> are measured with a combined <inline-formula><mml:math id="M52" display="inline"><mml:mrow><mml:mi>C</mml:mi><mml:mo>-</mml:mo><mml:mi>T</mml:mi></mml:mrow></mml:math></inline-formula>
sensor consisting of a platinum wire thermometer and an inductive
conductivity cell. Depth is measured with a semiconductor strain gauge
pressure transducer, and the instrument's sinking velocity is computed from
the rate of change of the pressure signal. All sensors are sampled at a rate
of 256 Hz. TurboMAP was deployed at a speed of 0.5–0.7 m s<inline-formula><mml:math id="M53" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and the
maximum deployment depth was approximately 800 m. It took 10–30 min to
complete each profile at shallow stations and approximately 1 h at deep
stations. Continuous time series of velocity at 5 min intervals and 16 m
vertical spacing between 38 and 982 m were obtained from a shipboard
acoustic Doppler current profiler (ADCP). At stations where the water depth
was more than 982 m, the current velocity cannot be referenced to the sea
floor. The movement of the ship was determined from GPS data and absolute
value of current velocity was estimated. CTD casts were conducted to provide
measurements of temperature and salinity for comparison. At stations where
the water depth was less than 800 m, CTD was deployed to 5 m above the
seafloor. At stations where the water depth was larger than 800 m, the
maximum deployment depth of CTD ranged from 800 to 1500 m. Data obtained
from six moorings (Fig. 1, yellow squares) were used to perform a brief
analysis of the internal wave field in the SCS. Moorings 1–3 were deployed
over the continental shelf/slope and moorings 4–6 were deployed in the deep
basin. More information regarding the moorings is given in Table 1.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><caption><p><bold>(a)</bold> Bottom topography of the SCS and observation stations (symbols).
Red stars indicate the stations located in region 1. Gray triangles indicate
the stations located in region 2. Magenta diamonds indicate the stations
located in region 3. Pink dots indicate the stations located in region 4.
Station numbers (i.e., 1, 2, 4 <inline-formula><mml:math id="M54" display="inline"><mml:mi mathvariant="normal">…</mml:mi></mml:math></inline-formula>) are indicated in each region.
The arrows indicate the order of the measurement. The yellow squares
indicate the locations of the moorings. <bold>(b)</bold> Spatial distribution of
<inline-formula><mml:math id="M55" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">κ</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (color dots). The blue vector gives the averaged 10 m wind
speed during the cruises. Black curves in the northern SCS are internal wave
packets derived from satellite images by Zhao et al. (2004).</p></caption>
        <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://os.copernicus.org/articles/13/503/2017/os-13-503-2017-f01.jpg"/>

      </fig>

      <p>Figure 2a shows the depth profile of shear <inline-formula><mml:math id="M56" display="inline"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>u</mml:mi><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>. At depths
of 190–200 m, the shear signal shows variations with peak levels around
0.6 s<inline-formula><mml:math id="M57" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, corresponding to dissipation rates of 10<inline-formula><mml:math id="M58" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">7</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M59" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>.
The velocity shear decreases below 200 m to peak values of 0.02 s<inline-formula><mml:math id="M60" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
corresponding to dissipation rates of 10<inline-formula><mml:math id="M61" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M62" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. Dissipation
spectra <inline-formula><mml:math id="M63" display="inline"><mml:mrow><mml:mi mathvariant="italic">ψ</mml:mi><mml:mfenced open="(" close=")"><mml:mi>k</mml:mi></mml:mfenced></mml:mrow></mml:math></inline-formula> computed from the shear signal in Fig. 2a are
shown in Fig. 2b–g along with the corresponding scaled Nasmyth universal
spectra (Nasmyth, 1970). The shape of the measured spectra agrees well with
the universal spectrum except in the wavenumber regions affected by vibration
noise caused by the strumming of the suspension wires in the flow (Wolk et
al., 2002). The spectra are computed using Welch's averaged periodogram
method with a fast Fourier transformation (FFT) length
of 2 m, corresponding to a consecutive segment of approximately 1700 data
points. The dissipation rates <inline-formula><mml:math id="M64" display="inline"><mml:mi mathvariant="italic">ε</mml:mi></mml:math></inline-formula> based on the measured spectra
range from 10<inline-formula><mml:math id="M65" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> to 10<inline-formula><mml:math id="M66" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">7</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M67" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, and they are computed by
integrating the measured shear spectrum

              <disp-formula id="Ch1.Ex1"><mml:math id="M68" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi mathvariant="italic">ε</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">7.5</mml:mn><mml:mi mathvariant="italic">ν</mml:mi><mml:mo>〈</mml:mo><mml:msup><mml:mfenced close=")" open="("><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi>u</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>〉</mml:mo><mml:mo>=</mml:mo><mml:mn mathvariant="normal">7.5</mml:mn><mml:mi mathvariant="italic">ν</mml:mi><mml:munderover><mml:mo movablelimits="false">∫</mml:mo><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:munderover><mml:mi mathvariant="italic">ψ</mml:mi><mml:mfenced open="(" close=")"><mml:mi>k</mml:mi></mml:mfenced><mml:mi mathvariant="normal">d</mml:mi><mml:mi>k</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

        where <inline-formula><mml:math id="M69" display="inline"><mml:mi mathvariant="italic">ν</mml:mi></mml:math></inline-formula> is the kinematic viscosity and  <inline-formula><mml:math id="M70" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mo>〉</mml:mo></mml:mrow></mml:math></inline-formula> denotes
the spatial average.  <inline-formula><mml:math id="M71" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M72" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> are the integration
limits. The lower integration limit <inline-formula><mml:math id="M73" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is set to 1 cpm and the upper
limit <inline-formula><mml:math id="M74" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is the highest wavenumber that is not contaminated by
vibration noise. Energy density in the low wavenumber area around 1 cpm is
not well estimated because of the limited length of the data segments and
the length of the profiler itself as the profiler tends to follow the
larger-scale flow. The noise level of the TurboMAP profiler is <inline-formula><mml:math id="M75" display="inline"><mml:mrow><mml:mi mathvariant="italic">ε</mml:mi><mml:mo>∼</mml:mo></mml:mrow></mml:math></inline-formula> 10<inline-formula><mml:math id="M76" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M77" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Matsuno and Wolk, 2005; Wolk et al.,
2002). Diapycnal diffusivity (Osborn, 1980) was calculated based
on the dissipation rate (<inline-formula><mml:math id="M78" display="inline"><mml:mrow><mml:mi mathvariant="italic">ε</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and stratification (<inline-formula><mml:math id="M79" display="inline"><mml:mrow><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mo>(</mml:mo><mml:mi>g</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo>)</mml:mo><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> using

              <disp-formula id="Ch1.Ex2"><mml:math id="M80" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi mathvariant="italic">κ</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="normal">Γ</mml:mi><mml:mi mathvariant="italic">ε</mml:mi><mml:mo>/</mml:mo><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

        <?xmltex \hack{\newpage}?><?xmltex \hack{\noindent}?>where the mixing efficiency <inline-formula><mml:math id="M81" display="inline"><mml:mi mathvariant="normal">Γ</mml:mi></mml:math></inline-formula> is set to 0.2 (Oakey,
1982). The shear variance, <inline-formula><mml:math id="M82" display="inline"><mml:mrow><mml:msup><mml:mi>S</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mover accent="true"><mml:mi>U</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>/</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:msup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mover accent="true"><mml:mi>V</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>/</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:msup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>, was calculated with <inline-formula><mml:math id="M83" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 16 m, where <inline-formula><mml:math id="M84" display="inline"><mml:mover accent="true"><mml:mi>U</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula> and <inline-formula><mml:math id="M85" display="inline"><mml:mover accent="true"><mml:mi>V</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula> are the respective zonal
and meridional components of the mean horizontal velocity obtained from the
shipboard ADCP. The mean velocity is averaged over the time intervals of the
TurboMAP measurements.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><caption><p>Examples of <bold>(a)</bold> micro-shear and <bold>(b–g)</bold> shear spectra at different
depths. The integration bounds (vertical dashed lines) and Nasmyth spectra
(smooth curves) are shown.</p></caption>
        <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://os.copernicus.org/articles/13/503/2017/os-13-503-2017-f02.png"/>

      </fig>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1" specific-use="star"><caption><p>Information about the moorings.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="8">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1">Mooring</oasis:entry>  
         <oasis:entry colname="col2">Latitude</oasis:entry>  
         <oasis:entry colname="col3">Longitude</oasis:entry>  
         <oasis:entry colname="col4">Water depth</oasis:entry>  
         <oasis:entry colname="col5">Measurement depth</oasis:entry>  
         <oasis:entry colname="col6">Measurement</oasis:entry>  
         <oasis:entry colname="col7">Time interval</oasis:entry>  
         <oasis:entry colname="col8">Bin size</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">(<inline-formula><mml:math id="M86" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N)</oasis:entry>  
         <oasis:entry colname="col3">(<inline-formula><mml:math id="M87" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E)</oasis:entry>  
         <oasis:entry colname="col4">(m)</oasis:entry>  
         <oasis:entry colname="col5">range (m)</oasis:entry>  
         <oasis:entry colname="col6">duration (d/m/yr)</oasis:entry>  
         <oasis:entry colname="col7">(min)</oasis:entry>  
         <oasis:entry colname="col8">(m)</oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">Mooring 1</oasis:entry>  
         <oasis:entry colname="col2">20.74</oasis:entry>  
         <oasis:entry colname="col3">117.75</oasis:entry>  
         <oasis:entry colname="col4">1260</oasis:entry>  
         <oasis:entry colname="col5">13–454</oasis:entry>  
         <oasis:entry colname="col6">01/08/14–27/09/14</oasis:entry>  
         <oasis:entry colname="col7">2</oasis:entry>  
         <oasis:entry colname="col8">16</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Mooring 2</oasis:entry>  
         <oasis:entry colname="col2">17.10</oasis:entry>  
         <oasis:entry colname="col3">110.39</oasis:entry>  
         <oasis:entry colname="col4">1410</oasis:entry>  
         <oasis:entry colname="col5">6–478</oasis:entry>  
         <oasis:entry colname="col6">04/05/09–04/09/10</oasis:entry>  
         <oasis:entry colname="col7">60</oasis:entry>  
         <oasis:entry colname="col8">8</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Mooring 3</oasis:entry>  
         <oasis:entry colname="col2">9.79</oasis:entry>  
         <oasis:entry colname="col3">112.74</oasis:entry>  
         <oasis:entry colname="col4">1680</oasis:entry>  
         <oasis:entry colname="col5">40–416</oasis:entry>  
         <oasis:entry colname="col6">25/05/09–10/11/10</oasis:entry>  
         <oasis:entry colname="col7">60</oasis:entry>  
         <oasis:entry colname="col8">8</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Mooring 4</oasis:entry>  
         <oasis:entry colname="col2">18.01</oasis:entry>  
         <oasis:entry colname="col3">115.60</oasis:entry>  
         <oasis:entry colname="col4">3790</oasis:entry>  
         <oasis:entry colname="col5">60–370</oasis:entry>  
         <oasis:entry colname="col6">09/04/98–05/10//98</oasis:entry>  
         <oasis:entry colname="col7">60</oasis:entry>  
         <oasis:entry colname="col8">10</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Mooring 5</oasis:entry>  
         <oasis:entry colname="col2">15.34</oasis:entry>  
         <oasis:entry colname="col3">114.96</oasis:entry>  
         <oasis:entry colname="col4">4265</oasis:entry>  
         <oasis:entry colname="col5">30–270</oasis:entry>  
         <oasis:entry colname="col6">07/10/98–11/04//99</oasis:entry>  
         <oasis:entry colname="col7">60</oasis:entry>  
         <oasis:entry colname="col8">10</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Mooring 6</oasis:entry>  
         <oasis:entry colname="col2">12.98</oasis:entry>  
         <oasis:entry colname="col3">114.38</oasis:entry>  
         <oasis:entry colname="col4">4370</oasis:entry>  
         <oasis:entry colname="col5">30–270</oasis:entry>  
         <oasis:entry colname="col6">09/10/98–12/04//99</oasis:entry>  
         <oasis:entry colname="col7">60</oasis:entry>  
         <oasis:entry colname="col8">10</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

</sec>
<sec id="Ch1.S3">
  <title>Results</title>
<sec id="Ch1.S3.SS1">
  <title>Water mass properties</title>
      <p>Intrusion of water from the Pacific can influence the evolving water
properties in the SCS. It has been confirmed by in situ measurements and
models (Shaw, 1991; Wu and Hsin, 2012) that there is a strong intrusion of
water from the Pacific into the SCS through the Luzon Strait. Two
well-defined water masses are active in this process (Qu et al., 2000):
high-salinity North Pacific Tropical Water (NPTW) and low-salinity North
Pacific Intermediate Water (NPIW). For simplicity, we divide the observations
into four regions (Fig. 1): region 1 is located to the west of the Luzon
Strait, region 2 is located to the northeast of Hainan Island, region 3 is
located in the central SCS, and region 4 is located in the southern SCS.
Figure 3 shows the <inline-formula><mml:math id="M88" display="inline"><mml:mrow><mml:mi>T</mml:mi><mml:mo>-</mml:mo><mml:mi>S</mml:mi></mml:mrow></mml:math></inline-formula> curves of the SCS and western Pacific. Temperature
and salinity data in the western Pacific (18.5–22.5<inline-formula><mml:math id="M89" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N,
124.5–128.5<inline-formula><mml:math id="M90" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E) were obtained from the World Ocean Database 2013
(<uri>http://www.nodc.noaa.gov/OC5/woa13/woa13data.html</uri>). The <inline-formula><mml:math id="M91" display="inline"><mml:mrow><mml:mi>T</mml:mi><mml:mo>-</mml:mo><mml:mi>S</mml:mi></mml:mrow></mml:math></inline-formula> curve in
the western Pacific shows a reversed “<inline-formula><mml:math id="M92" display="inline"><mml:mi>S</mml:mi></mml:math></inline-formula>” shape with NPTW and NPIW clearly
identified (Fig. 3, black dashed curve). NPTW and NPIW correspond to the
maximum salinity layer at <inline-formula><mml:math id="M93" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="italic">θ</mml:mi></mml:msub><mml:mo>∈</mml:mo></mml:mrow></mml:math></inline-formula> (22.5–25.5) kg m<inline-formula><mml:math id="M94" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
and minimum salinity layer at <inline-formula><mml:math id="M95" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="italic">θ</mml:mi></mml:msub><mml:mo>∈</mml:mo></mml:mrow></mml:math></inline-formula>
(25.5–27.5) kg m<inline-formula><mml:math id="M96" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively. In the maximum salinity layer
(22.5–25.5 kg m<inline-formula><mml:math id="M97" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, the water column in region 1 had a salinity
maximum of 34.8 psu that approaches the maximum value of the NPTW. Salinity
decreased gradually from the Luzon Strait to Hainan Island (region 2) and to
the central and southern SCS (region 3 and region 4). This trend is reversed
in the minimum salinity layer (25.5–27.5 kg m<inline-formula><mml:math id="M98" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, where the salinity
slightly increased from the Luzon Strait to Hainan Island and to the central
and southern SCS. The salinity minimum in the Pacific was found to be lower
than that in the SCS. The reverse S shape becomes remarkably weak from the
northern SCS to the southern SCS, a change to which turbulent mixing
occurring in the SCS might have made a significant contribution.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><caption><p>Relation of potential temperature versus salinity (with the
potential density <inline-formula><mml:math id="M99" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="italic">θ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in kg m<inline-formula><mml:math id="M100" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> contours overlaid) of
all stations. The black dashed curve shows the relation for potential
temperature versus salinity of the western Pacific for reference.</p></caption>
          <?xmltex \igopts{width=236.157874pt}?><graphic xlink:href="https://os.copernicus.org/articles/13/503/2017/os-13-503-2017-f03.png"/>

        </fig>

      <?xmltex \floatpos{p}?><fig id="Ch1.F4" specific-use="star"><caption><p><bold>(a)</bold> Dissipation rate (<inline-formula><mml:math id="M101" display="inline"><mml:mrow><mml:mi mathvariant="italic">ε</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, <bold>(b)</bold> diapycnal diffusivity
(<inline-formula><mml:math id="M102" display="inline"><mml:mrow><mml:mi mathvariant="italic">κ</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, <bold>(c)</bold> buoyancy frequency squared (<inline-formula><mml:math id="M103" display="inline"><mml:mrow><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, <bold>(d)</bold> shear variance
(<inline-formula><mml:math id="M104" display="inline"><mml:mrow><mml:msup><mml:mi>S</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, and <bold>(e)</bold> Richardson number (<inline-formula><mml:math id="M105" display="inline"><mml:mrow><mml:mi>R</mml:mi><mml:mi>i</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> from all of the stations. The
gray shading indicates the bathymetry. In <bold>(a)</bold>–<bold>(e)</bold> the boundaries of the
thermocline are indicated (gray curves). The red line on the color bar of
<bold>(e)</bold> represents <inline-formula><mml:math id="M106" display="inline"><mml:mrow><mml:mi>R</mml:mi><mml:mi>i</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.25. The vertical dashed lines divide the stations
into four regions with the symbols (red stars, gray triangles, magenta
diamonds, and pink dots) shown at the top of <bold>(a)</bold>. These symbols correspond
to the station symbols in Fig. 1a.</p></caption>
          <?xmltex \igopts{width=384.112205pt}?><graphic xlink:href="https://os.copernicus.org/articles/13/503/2017/os-13-503-2017-f04.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS2">
  <title>Microstructure measurements</title>
      <p>Figure 4a shows the distribution of the dissipation rate with the
thermocline boundaries overlain. Different criteria have been used to define
the top of the thermocline (<inline-formula><mml:math id="M107" display="inline"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> in terms of either temperature or
density. Here, we defined the top of the thermocline as the depth at which
the potential temperature change from the surface temperature is 0.5 <inline-formula><mml:math id="M108" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C. The bottom of the thermocline (<inline-formula><mml:math id="M109" display="inline"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is defined as the
depth at which the temperature gradient is equal to 0.05 <inline-formula><mml:math id="M110" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C m<inline-formula><mml:math id="M111" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>. The surface mixed layers are slightly deep in region 1 compared
with the other regions. The average depths of the surface mixed layer in
regions 1–4 are 35.2, 14.7, 19.4, and 26.8 m, respectively.</p>
      <p>In the surface mixed layer, strong turbulence was accompanied by high
dissipation rates (Fig. 4a), which may be attributed to various factors, such
as wind stirring, buoyancy flux, and surface waves. Below the surface mixed
layer, high dissipation rates (Fig. 4a) were observed in the thermocline,
with the average <inline-formula><mml:math id="M112" display="inline"><mml:mi mathvariant="italic">ε</mml:mi></mml:math></inline-formula> in the thermocline reaching
4.6 <inline-formula><mml:math id="M113" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M114" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M115" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, which was 5 times larger than the
value of 8.2 <inline-formula><mml:math id="M116" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M117" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M118" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> below the thermocline.
Strong shear (Fig. 4d) also occurred in the thermocline, with an averaged
<inline-formula><mml:math id="M119" display="inline"><mml:mrow><mml:msup><mml:mi>S</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> in the thermocline of 3.3 <inline-formula><mml:math id="M120" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M121" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M122" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, which was 5
times larger than that below the thermocline
(6.5 <inline-formula><mml:math id="M123" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M124" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M125" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. The strong spatial correlation between
dissipation and shear implies that shear played an important role in driving
the dissipation. Contrary to the dissipation rates, the diapycnal
diffusivities (Fig. 4b) in the thermocline were slightly weaker than that
below the thermocline. The high diapycnal diffusivities below the thermocline
were mainly due to the relatively weak stratification (Fig. 4c). The average
<inline-formula><mml:math id="M126" display="inline"><mml:mrow><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> below the thermocline was 8.4 <inline-formula><mml:math id="M127" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M128" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M129" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, 4 times
smaller than the value of 3.4 <inline-formula><mml:math id="M130" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M131" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M132" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> in the
thermocline.</p>
      <p>Turbulent mixing in region 1 displayed a different feature from that of the
other regions. In region 1, turbulence was more active than that in other
regions, with the maximum dissipation rate reaching 10<inline-formula><mml:math id="M133" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M134" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
(Fig. 4a) and the maximum diapycnal diffusivity exceeding
10<inline-formula><mml:math id="M135" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M136" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M137" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Fig. 4b). In addition, region 1 had weak
stratification but strong shear compared with other regions (Fig. 4c and d).
Most of the water column in region 1 was occupied by a Richardson number of
order 1, almost 2 orders of magnitude smaller than that in the other regions
(Fig. 4e). Richardson number <inline-formula><mml:math id="M138" display="inline"><mml:mrow><mml:mi>R</mml:mi><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>/</mml:mo><mml:msup><mml:mi>S</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> was estimated following
MacKinnon and Gregg (2005). A 2 m buoyancy frequency and 16 m shear were
used in the calculation. The resolutions of shear used in previous
literatures range from 2 m to 16 m (MacKinnon and Gregg, 2003b, 2005; van
der Lee and Umlauf, 2011; Xie et al., 2013; Yang et al., 2014). High
resolution of shear (2–4 m) was used on the shelf area to resolve
small-scale internal waves and low resolution of shear (8–16 m) was often
used in deep water to cover more water depth. Although the Richardson number
calculated on 16 m shear might be overestimated, it does not affect the
comparison of the Richardson number in different regions too much. One
prominent feature in region 1 is that some turbulent patches with elevated
dissipation rates (<inline-formula><mml:math id="M139" display="inline"><mml:mi mathvariant="italic">ε</mml:mi></mml:math></inline-formula> &gt; 10<inline-formula><mml:math id="M140" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">7</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M141" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and
diapycnal diffusivities
(<inline-formula><mml:math id="M142" display="inline"><mml:mi mathvariant="italic">κ</mml:mi></mml:math></inline-formula> &gt; 10<inline-formula><mml:math id="M143" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M144" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M145" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> were observed below
the surface mixed layer. These turbulent patches often occurred at depths
where the Richardson number was below 0.25, for example, station 6 (between
175 and 195 m), station 8 (between 80 and 100 m), and station 11 (between
175 and 195 m) (indicated by the arrows in Fig. 4), which suggests that
elevated dissipation rates and diapycnal diffusivities in the turbulent
patches are likely to result from shear instability. More detail regarding
the shear instability will be discussed in the following text. Compared with
region 1, turbulent mixing in regions 2–4 was relatively weak, with an
average <inline-formula><mml:math id="M146" display="inline"><mml:mi mathvariant="italic">ε</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M147" display="inline"><mml:mi mathvariant="italic">κ</mml:mi></mml:math></inline-formula> in the upper 500 m (not including the
surface mixed layer) of 1.1 <inline-formula><mml:math id="M148" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M149" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M150" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and
3.7 <inline-formula><mml:math id="M151" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M152" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M153" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M154" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, respectively. These two values
are almost 1 order of magnitude smaller than those (<inline-formula><mml:math id="M155" display="inline"><mml:mi mathvariant="italic">ε</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M156" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 8.3 <inline-formula><mml:math id="M157" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M158" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M159" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and <inline-formula><mml:math id="M160" display="inline"><mml:mi mathvariant="italic">κ</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M161" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 2.7 <inline-formula><mml:math id="M162" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M163" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M164" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M165" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> in region 1. Weak
turbulent mixing in regions 2–4 is likely to be associated with the strong
stratification and weak shear. <inline-formula><mml:math id="M166" display="inline"><mml:mrow><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> (Fig. 4c) was greater than <inline-formula><mml:math id="M167" display="inline"><mml:mrow><mml:msup><mml:mi>S</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>
(Fig. 4d) in regions 2–4, with most of the water column occupied by a large
Richardson number (<inline-formula><mml:math id="M168" display="inline"><mml:mrow><mml:mi>R</mml:mi><mml:mi>i</mml:mi></mml:mrow></mml:math></inline-formula> &gt; 10; Fig. 4e).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><caption><p>From top to bottom, three sets of profiles are from station 6 in
region 1 <bold>(a, b, c, d, e)</bold>, station 22 in region 3 <bold>(f, g, h, i, j)</bold>, and station 6
in region 4 <bold>(k, l, m, n, o)</bold>. For each station, quantities plotted are (from left to right) potential density, shear variance (red) and buoyancy
frequency squared (black), Richardson number (the vertical line indicates
<inline-formula><mml:math id="M169" display="inline"><mml:mrow><mml:mi>R</mml:mi><mml:mi>i</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.25), observed (pink curves) and MG model (stars) and GH model
(triangles) dissipation rates, and observed diapycnal diffusivity. The
observed dissipation rate and diapycnal diffusivity have been vertically
averaged over the 16 m ADCP bins. The inset in <bold>(a)</bold> enlarges the density
profile to show the overturns.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://os.copernicus.org/articles/13/503/2017/os-13-503-2017-f05.png"/>

        </fig>

      <p>To further understand the changing pattern of turbulence in the SCS, we now
look in detail at the profiles of various quantities at three stations in
different regions (Fig. 5): station 6 was from region 1, station 22 was from
region 3, and station 6 was from region 4. At station 6 in region 1
(Fig. 5a–e), the shear variance was slightly smaller than the buoyancy
frequency squared over most of the water column (Fig. 5b). However, the shear
variance exceeded the buoyancy frequency squared at some depths; for example,
the shear variance was greater than the buoyancy frequency squared at a depth
of 185 m, pushing the Richardson number below 0.25, which implies shear
instability (Fig. 5c). Small overturns were also found in the density profile
at depths of 175 to 195 m (Fig. 5a, the inset). The dissipation rates
(Fig. 5d) and diapycnal diffusivities (Fig. 5e) at the corresponding depths
(175–195 m) were elevated by more than 1 order of magnitude, with the
diapycnal diffusivities reaching 5.0 <inline-formula><mml:math id="M170" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M171" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M172" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M173" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
1 to 2 orders of magnitude higher than the levels in an open ocean
thermocline. The dissipation rates induced by shear instability contributed
significantly to the turbulent mixing in the water column. Nearly 45 % of
the total dissipation rates in the upper 500 m (not including the surface
mixed layer) was contributed by the elevated dissipation rates from the
turbulent patch. The second and third sets of profiles were from region 3
(Fig. 5f–j) and region 4 (Fig. 5k–o), respectively. The buoyancy frequency
squared was higher than the shear variance (Fig. 5g and l), and no Richardson
numbers below 0.25 were observed (Fig. 5h and m). The water column was
occupied by dissipation rates ranging from 10<inline-formula><mml:math id="M174" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> to
10<inline-formula><mml:math id="M175" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M176" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Fig. 5i and n) and diapycnal diffusivities of
10<inline-formula><mml:math id="M177" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> to 10<inline-formula><mml:math id="M178" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M179" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M180" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Fig. 5j and o), comparable to the
levels in an open ocean thermocline.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><caption><p>Probability density functions of dissipation rates in <bold>(a)</bold> region 1,
<bold>(b)</bold> region 2, <bold>(c)</bold> region 3, and <bold>(d)</bold> region 4.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://os.copernicus.org/articles/13/503/2017/os-13-503-2017-f06.png"/>

        </fig>

      <p>The above analysis indicates that high dissipation rates mainly occurred in
the thermocline and the distribution of thermocline dissipation was spatially
non-uniform. Turbulent mixing in the thermocline can be driven by various
factors, such as surface wind, internal waves, and internal tides. In order
to find out whether the turbulent mixing in the thermocline is driven by a
single forcing or multiple forcing, we explore the probability density
function (PDF) of dissipation rates estimated from a non-parametric PDF
estimator (histogram). The PDFs of dissipation rates (Fig. 6) in the four
regions do not show sharp shapes with a single significant peak. Instead,
they show flat shapes with multiple peaks, especially the PDFs in regions 1
and 4, which suggests that the turbulent mixing in the thermocline is driven
by multiple forcing. To further explore the energy sources to the thermocline
dissipation, we calculate the averaged dissipation rate
<inline-formula><mml:math id="M181" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">ε</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and the averaged diapycnal diffusivity
<inline-formula><mml:math id="M182" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">κ</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in the thermocline.
<inline-formula><mml:math id="M183" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">ε</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M184" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">κ</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
are given by

                <disp-formula id="Ch1.Ex3"><mml:math id="M185" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">ε</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:munderover><mml:mo movablelimits="false">∫</mml:mo><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub></mml:mrow></mml:munderover><mml:mi mathvariant="italic">ε</mml:mi><mml:mi mathvariant="normal">d</mml:mi><mml:mi>z</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mtext>and</mml:mtext><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">κ</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi>t</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:munderover><mml:mo movablelimits="false">∫</mml:mo><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub></mml:mrow></mml:munderover><mml:mi mathvariant="italic">κ</mml:mi><mml:mi mathvariant="normal">d</mml:mi><mml:mi>z</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

          <?xmltex \hack{\newpage}?><?xmltex \hack{\noindent}?>where <inline-formula><mml:math id="M186" display="inline"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">b</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M187" display="inline"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">t</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are the bottom and top of the
thermocline, respectively. The dissipation rates and diapycnal diffusivities
affected by the surface mixed layer were excluded before calculating
<inline-formula><mml:math id="M188" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">ε</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M189" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">κ</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>.
Figure 7b shows the averaged dissipation rate in the thermocline.
<inline-formula><mml:math id="M190" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">ε</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> decreased toward the south from <inline-formula><mml:math id="M191" display="inline"><mml:mi>O</mml:mi></mml:math></inline-formula>
(10<inline-formula><mml:math id="M192" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M193" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> in region 1 to <inline-formula><mml:math id="M194" display="inline"><mml:mi>O</mml:mi></mml:math></inline-formula> (10<inline-formula><mml:math id="M195" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M196" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> in
region 4. In region 1, <inline-formula><mml:math id="M197" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">ε</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> ranged from
1.8 <inline-formula><mml:math id="M198" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M199" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> to 5.0 <inline-formula><mml:math id="M200" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M201" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M202" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, with a
mean value of 1.8 <inline-formula><mml:math id="M203" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M204" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M205" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, which was 7 times, 9
times, and 12 times higher than the mean values of region 2
(2.5 <inline-formula><mml:math id="M206" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M207" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M208" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, region 3
(2.1 <inline-formula><mml:math id="M209" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M210" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M211" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, and region 4
(1.5 <inline-formula><mml:math id="M212" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M213" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M214" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, respectively. Elevated
<inline-formula><mml:math id="M215" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">κ</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> was also observed in region 1 (Fig. 7c).
The average <inline-formula><mml:math id="M216" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">κ</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in region 1 was
3.5 <inline-formula><mml:math id="M217" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M218" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M219" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M220" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, which was an order of magnitude
greater than the values of region 2
(3.3 <inline-formula><mml:math id="M221" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M222" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M223" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M224" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, region 3
(2.2 <inline-formula><mml:math id="M225" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M226" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M227" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M228" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, and region 4
(2.1 <inline-formula><mml:math id="M229" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M230" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M231" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M232" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. One prominent feature in the
northern SCS is that the mean of <inline-formula><mml:math id="M233" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">κ</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in region
1 was 11 times higher than the value in region 2, while the mean of
<inline-formula><mml:math id="M234" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">ε</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in region 1 was only 7 times higher
than that the value in region 2. This difference mainly resulted from the
weak stratification in region 1 (Fig. 4c).</p>
      <p>Microstructure measurements at different stations were taken at different
times and the measurement time might be one of the factors that affect the
variability of <inline-formula><mml:math id="M235" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">ε</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M236" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">κ</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. Strong turbulent mixing generally occurs
during spring tides (Peters and Bokhorst, 2000). Thus it is possible that
microstructure measurements in region 1 were taken during spring tides and
those in regions 2–4 were taken during neap tides, and the elevated
turbulent mixing in region 1 may result from a different measurement time. To
rule out this possibility, we obtained the barotropic tides from the global
inverse tide model (TPXO; Egbert and Erofeeva, 2002), which give us the time
information of spring–neap tides during the period of observation. Only the
barotropic tides at 18<inline-formula><mml:math id="M237" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N, 114<inline-formula><mml:math id="M238" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E were extracted because
the bias in the arrival of spring–neap tides in different locations of the
SCS is small (no longer than 3 h, not shown). The 14-day spring–neap cycles
were well represented in the extracted barotropic tides (Fig. 7d). A
comparison of <inline-formula><mml:math id="M239" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">ε</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M240" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">κ</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> to the extracted tides suggests that
elevated turbulent mixing in region 1 was not attributed to the measurement
time; for example, stations in regions 1 and 3 spanned neap and spring tides
(see Fig. 7d, stars and diamonds), but the averaged
<inline-formula><mml:math id="M241" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">ε</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M242" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">κ</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
in region 1 were still an order of magnitude greater than the values in
region 3 (Fig. 7b and c).</p>
      <p>Surface wind is an important energy source for the turbulence in the ocean
(Brainerd and Gregg, 1993; Burchard and Rippeth, 2009; Matsuno et al., 2005;
Shay and Gregg, 1986), and indirectly enhances the turbulence in the
thermocline through inertial-gravity wave motion generated by surface wind
stress. To find out whether surface wind affects the turbulence in the
thermocline significantly, we estimate the wind energy flux. The wind energy
flux (Yang et al., 2014) at a height of 10 m, <inline-formula><mml:math id="M243" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, is given by
<inline-formula><mml:math id="M244" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">D</mml:mi></mml:msub><mml:msubsup><mml:mi>U</mml:mi><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">3</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula>, where
<inline-formula><mml:math id="M245" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mi mathvariant="normal">a</mml:mi></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula>1.2 kg m<inline-formula><mml:math id="M246" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> is the air density, <inline-formula><mml:math id="M247" display="inline"><mml:mrow><mml:msub><mml:mi>C</mml:mi><mml:mi mathvariant="normal">D</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the
drag coefficient with a value of 1.14 <inline-formula><mml:math id="M248" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M249" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (Large and Pond,
1981), and <inline-formula><mml:math id="M250" display="inline"><mml:mrow><mml:msub><mml:mi>U</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is the wind speed at 10 m. The wind speed data during
the observation come from the European Centre for Medium-Range Weather
Forecasts
(<uri>http://apps.ecmwf.int/datasets/data/interim-full-daily/levtype=sfc/</uri>).
The variability of <inline-formula><mml:math id="M251" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is shown in Fig. 7a. Winds were light
(<inline-formula><mml:math id="M252" display="inline"><mml:mrow><mml:msub><mml:mi>U</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> &lt; 9 m s<inline-formula><mml:math id="M253" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> at all the stations with
<inline-formula><mml:math id="M254" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> &lt; 1.0 W m<inline-formula><mml:math id="M255" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> except for stations 11–13 in region 1.
The influence of wind stress on the variability of turbulence in the
thermocline was small, as one can see from Fig. 7a–c that the variability of
<inline-formula><mml:math id="M256" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">ε</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M257" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">κ</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> did not follow the variability of <inline-formula><mml:math id="M258" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>.
The values of <inline-formula><mml:math id="M259" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (10<inline-formula><mml:math id="M260" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W m<inline-formula><mml:math id="M261" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> at stations 1–9 in region 4
were an order of magnitude larger than that at stations 1–7 in region 1,
while the values of <inline-formula><mml:math id="M262" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">ε</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M263" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">κ</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> at stations 1–9 in region 4 were almost an
order of magnitude smaller than that at stations 1–7 in region 1. Evidence
can also be found from the comparison between
<inline-formula><mml:math id="M264" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">κ</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and averaged wind speed during the cruises
(Fig. 1b). The average winds were evenly distributed over the SCS, which is
significantly different from the spatial distribution of
<inline-formula><mml:math id="M265" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">κ</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. These observations suggest that the
contribution of surface winds to the observed strong turbulence in region 1
was small. Measurements from Matsuno and Wolk (2005) also indicate that the
contribution of surface winds to the turbulence below the surface mixing
layer was small during light winds and that only when the wind speed reached
10 m s<inline-formula><mml:math id="M266" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> would wind stirring have made a notable contribution to the
turbulence below the surface mixing layer.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><caption><p><bold>(a)</bold> Wind energy flux <inline-formula><mml:math id="M267" display="inline"><mml:mrow><mml:msub><mml:mi>E</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> for each station
during the TurboMAP measurement. <bold>(b)</bold> The average dissipation rate <inline-formula><mml:math id="M268" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">ε</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <bold>(c)</bold> average diapycnal diffusivity
<inline-formula><mml:math id="M269" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">κ</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in the thermocline. The vertical
bars in <bold>(b)</bold> and <bold>(c)</bold> indicate the 95 % bootstrapped confidence interval.
The vertical dashed lines divide the stations into four regions with symbols
(red stars, gray triangles, magenta diamonds, and pink dots) shown at the
top of <bold>(a)</bold>. These symbols correspond to the station symbols in Fig. 1a.
<bold>(d)</bold> Time series of the barotropic tidal velocity (<inline-formula><mml:math id="M270" display="inline"><mml:mrow><mml:msub><mml:mi>u</mml:mi><mml:mi mathvariant="normal">bt</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> predicted from TPXO
7.1 with the station symbols overlain.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://os.copernicus.org/articles/13/503/2017/os-13-503-2017-f07.png"/>

        </fig>

      <p>Internal waves and internal tides are candidates that contribute to the
elevated turbulent mixing in region 1. It is known that internal waves can
provide large amounts of energy for turbulence in the ocean (Alford et al.,
2015). Internal waves are unevenly distributed throughout the SCS. Most of
the internal waves and internal tides originate in the Luzon Strait and
propagate northwestwards through the deep water zone near the Luzon Strait to
the continental shelf (Guo and Chen, 2014; Klymak et al., 2006b; Lien et al.,
2005; Ramp et al., 2004; Zhao, 2014; Zhao et al., 2004). Internal wave
packets derived from satellite images by Zhao et al. (2004) are shown in
Fig. 1b for reference. Most of the internal wave packets occurred on the
continental shelf in region 1 where <inline-formula><mml:math id="M271" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">κ</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> can be
10<inline-formula><mml:math id="M272" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>–10<inline-formula><mml:math id="M273" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M274" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M275" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, almost an order of magnitude greater
than that on the adjacent continental shelf in region 2. A report based on
mooring data (Lien et al., 2014) indicates that internal waves would induce
strong shear during propagation. Strong shear was also found in region 1 in
our measurement (Fig. 4d). These observations suggested that internal waves
and internal tides generated near the Luzon Strait are expected to make a
dominant contribution to the elevated turbulence in region 1.</p>
</sec>
<sec id="Ch1.S3.SS3">
  <title>Parameterizations of turbulence</title>
      <p>In this section we evaluate two models for parameterizing the dissipation
rate in terms of more easily observed or modeled quantities, such as
stratification and shear. One wave–wave interaction parameterization (Gregg,
1989; MacKinnon and Gregg, 2003a) in the open ocean is the Gregg–Henyey
scaling (known as the GH model) given by

                <disp-formula specific-use="align"><mml:math id="M276" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mi mathvariant="normal">GH</mml:mi></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mfenced open="[" close="]"><mml:mi>f</mml:mi><mml:msup><mml:mi mathvariant="normal">cosh</mml:mi><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mfenced open="(" close=")"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow><mml:mi>f</mml:mi></mml:mfrac></mml:mstyle></mml:mfenced></mml:mfenced><mml:mfenced open="(" close=")"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi>S</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:mrow><mml:mrow><mml:msubsup><mml:mi>S</mml:mi><mml:mi mathvariant="normal">GM</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msubsup></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mfenced open="(" close=")"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow><mml:mrow><mml:msubsup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">0</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">and</mml:mi></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msubsup><mml:mi>S</mml:mi><mml:mi mathvariant="normal">GM</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msubsup></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>=</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:msub><mml:mi mathvariant="italic">β</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:msup><mml:mfenced close=")" open="("><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow><mml:mrow><mml:msubsup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">0</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>

            where <inline-formula><mml:math id="M277" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">α</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 1.8 <inline-formula><mml:math id="M278" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M279" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> J kg<inline-formula><mml:math id="M280" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, <inline-formula><mml:math id="M281" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> is the
Coriolis frequency, <inline-formula><mml:math id="M282" display="inline"><mml:mi>S</mml:mi></mml:math></inline-formula> is the low-frequency/low-mode resolved shear, <inline-formula><mml:math id="M283" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
is a reference buoyancy frequency, cosh<inline-formula><mml:math id="M284" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> denotes the inverse hyperbolic
cosine function, and <inline-formula><mml:math id="M285" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">β</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 1.66 <inline-formula><mml:math id="M286" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M287" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M288" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>.
Another analytical model (MacKinnon and Gregg, 2003a) is the MacKinnon–Gregg
model (known as the MG model) given by

                <disp-formula id="Ch1.Ex6"><mml:math id="M289" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mi mathvariant="normal">MG</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mfenced close=")" open="("><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi>N</mml:mi><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mfenced close=")" open="("><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi>S</mml:mi><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

          where <inline-formula><mml:math id="M290" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi>N</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 5.1 <inline-formula><mml:math id="M291" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M292" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> rad s<inline-formula><mml:math id="M293" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> and
<inline-formula><mml:math id="M294" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is an adjustable constant that gives the model dissipation
rate the same cruise average as the observational data. The adjustable
constant <inline-formula><mml:math id="M295" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> shows great variability in different regions and
seasons, spanning from 10<inline-formula><mml:math id="M296" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> to more than 10<inline-formula><mml:math id="M297" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M298" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
(MacKinnon and Gregg, 2005; Palmer et al., 2008; van der Lee and Umlauf,
2011; Xie et al., 2013). This regional and temporal variability of
<inline-formula><mml:math id="M299" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> strongly suggests the importance of different physical
processes for setup and maintenance of the background levels of turbulent
dissipation. Here, we assess the two models for parameterization of the
turbulence in the northern SCS (dissipation data are from the stations in
region 1 and region 2), central SCS (dissipation data are from the stations
in region 3), and southern SCS (dissipation data are from the stations in
region 4). Different values of parameter <inline-formula><mml:math id="M300" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> are selected for
the parameterizations due to their different mixing backgrounds:
<inline-formula><mml:math id="M301" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 1.65 <inline-formula><mml:math id="M302" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M303" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M304" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for the northern
SCS, <inline-formula><mml:math id="M305" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.96 <inline-formula><mml:math id="M306" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M307" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M308" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> for the
central SCS, and <inline-formula><mml:math id="M309" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.50 <inline-formula><mml:math id="M310" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M311" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M312" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
for the southern SCS. All of the data affected by the surface mixed layers or
bottom mixed layers were excluded for the parameterizations. To reduce the
bias introduced by the different vertical resolutions of the shear and
stratification data, 16 m buoyancy frequency and 16 m shear were used in
the parameterization; i.e., density was first interpolated onto the ADCP grid
and <inline-formula><mml:math id="M313" display="inline"><mml:mrow><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> was computed from finite differencing. Accordingly, the
dissipation rates were vertically averaged over the 16 m ADCP bins.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><caption><p>Dissipation rates of observation <inline-formula><mml:math id="M314" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mi mathvariant="normal">OB</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (left column), MG model <inline-formula><mml:math id="M315" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mi mathvariant="normal">MG</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>
(middle column), and GH model <inline-formula><mml:math id="M316" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mi mathvariant="normal">GH</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (right column) averaged in
bins of 16 m buoyancy frequency squared (<inline-formula><mml:math id="M317" display="inline"><mml:mrow><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and 16 m shear variance
(<inline-formula><mml:math id="M318" display="inline"><mml:mrow><mml:msup><mml:mi>S</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. All data affected by the surface mixed layers or bottom mixed
layers were excluded. <bold>(a)</bold>–<bold>(c)</bold> show the results of the stations in the northern
SCS, <bold>(d)</bold>–<bold>(f)</bold> show the results of the stations in the central SCS, and
<bold>(g)</bold>–<bold>(i)</bold> show the results of the stations in the southern SCS. The boundaries of
<inline-formula><mml:math id="M319" display="inline"><mml:mrow><mml:mi>R</mml:mi><mml:mi>i</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 0.25 (oblique red lines) and <inline-formula><mml:math id="M320" display="inline"><mml:mrow><mml:mi>R</mml:mi><mml:mi>i</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 1 (oblique blue lines) are shown
for reference.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://os.copernicus.org/articles/13/503/2017/os-13-503-2017-f08.png"/>

        </fig>

      <p>Figure 8 shows the distribution of dissipation rates (observed and modeled) in
<inline-formula><mml:math id="M321" display="inline"><mml:mrow><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M322" display="inline"><mml:mrow><mml:msup><mml:mi>S</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> space. The observed dissipation rates in the SCS (Fig. 8, left column) increase with increasing buoyancy frequency and shear. The
GH model fails to reproduce these kinematic relationships (Fig. 8, right
column). The dependence of <inline-formula><mml:math id="M323" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mi mathvariant="normal">GH</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> on shear is too
strong, with the dissipation rates underestimated in weak shear.
<inline-formula><mml:math id="M324" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mi mathvariant="normal">GH</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> also varies inversely with the buoyancy frequency for a
given level of shear, contrary to the observation (Fig. 8, left column).
Instead, the MG model dissipation rates (Fig. 8, middle column) display a
pattern qualitatively consistent with the observed data (Fig. 8, left
column). Both the observed and MG model dissipation rates scale positively
with shear and the buoyancy frequency. In the northern SCS, the turbulence
was more complicated than the predictions of the MG model. The MG model
(Fig. 8b) underestimates the elevated dissipation rates that scattered in
Fig. 8a; for example, the MG model underestimates the elevated dissipation
rates at (<inline-formula><mml:math id="M325" display="inline"><mml:mrow><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 6.5 <inline-formula><mml:math id="M326" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M327" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>,
<inline-formula><mml:math id="M328" display="inline"><mml:mrow><mml:msup><mml:mi>S</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 5.0 <inline-formula><mml:math id="M329" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M330" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">6</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M331" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, (<inline-formula><mml:math id="M332" display="inline"><mml:mrow><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 1.0 <inline-formula><mml:math id="M333" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M334" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, <inline-formula><mml:math id="M335" display="inline"><mml:mrow><mml:msup><mml:mi>S</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 1.0 <inline-formula><mml:math id="M336" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M337" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M338" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, and
(<inline-formula><mml:math id="M339" display="inline"><mml:mrow><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 7.9 <inline-formula><mml:math id="M340" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M341" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, <inline-formula><mml:math id="M342" display="inline"><mml:mrow><mml:msup><mml:mi>S</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 2.0 <inline-formula><mml:math id="M343" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M344" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M345" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9" specific-use="star"><caption><p>Average dissipation rate calculated in bins of buoyancy frequency
squared (<inline-formula><mml:math id="M346" display="inline"><mml:mrow><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and shear variance (<inline-formula><mml:math id="M347" display="inline"><mml:mrow><mml:msup><mml:mi>S</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> for the northern SCS <bold>(a–b)</bold>,
central SCS <bold>(c–d)</bold>, and southern SCS <bold>(e–f)</bold>. The green, red, and blue curves
are the results of the observation, MG model, and GH model, respectively.
The grey shading indicates the 95 % bootstrapped confidence interval for
the observed dissipation rates.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://os.copernicus.org/articles/13/503/2017/os-13-503-2017-f09.png"/>

        </fig>

      <p>Figure 9 shows the dissipation rate binned in terms of stratification or
shear alone. They are equivalent to integrating the two-dimensional plots in
Fig. 8 horizontally and vertically. Both models reproduce the slope of the
dissipation rate versus the buoyancy frequency (<inline-formula><mml:math id="M348" display="inline"><mml:mrow><mml:mi mathvariant="italic">ε</mml:mi><mml:mo>∝</mml:mo><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>;
Fig. 9a, c, and e), though the GH model dissipation rates are too large on
average. However, the two models show large differences in the trend of the
dissipation rate versus shear (Fig. 9b, d, and f). The MG model successfully
captures the essential kinematic relationship between the dissipation rate
and shear, whereas the GH model dissipation rates have a much steeper
relationship with shear. Comparing the three regions, we find that the
confidence intervals of the observed dissipation rates in the northern SCS
(Fig. 9a and b) were wider than those in the central and southern SCS
(Fig. 9c–f). In addition, the observed dissipation rates in the northern SCS
were slightly larger and showed greater fluctuations than the MG model
dissipation rates (Fig. 9a and b). The wide confidence intervals and high
observed dissipation rates in Fig. 9a and b mainly resulted from the elevated
dissipation rates scattered in Fig. 8a. The MG model underestimated these
elevated dissipation rates (comparing Fig. 8a with Fig. 8b). To explore these
underestimations, we directly compared the model dissipation rates with the
observed dissipation rates at three selected stations (Fig. 5, fourth
column). For the stations from regions 3 and 4 (Fig. 5i and n), the
relationships between the observed dissipation rates (pink curves) and the GH
model dissipation rates (triangles) were poor, with the GH model dissipation
rates deviating from the observed data by 1 order of magnitude. Instead, the
MG model dissipation rates (stars) fared better than the GH model dissipation
rates against the observed data. For station 6 from region 1 (Fig. 5d), the
GH model dissipation rates also failed to overlap the observed data. Instead,
the MG model dissipation rates agreed quite well with the observed data,
except for the elevated dissipation rates induced by shear instability; for
example, the MG model underestimated the elevated dissipation rates at depths
of 175 to 195 m by more than 1 order of magnitude. The elevated dissipation
rates scattered in Fig. 8a mainly resulted from the dissipation rates induced
by shear instability. However, the GH model dissipation rates seemed to agree
with the elevated dissipation rates induced by shear instability
(175–195 m). This agreement might be due to the fact that dissipation rates
resulting from shear instability depend on the Richardson number, and the GH
model also demonstrates Richardson number dependency.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10" specific-use="star"><caption><p>Observed dissipation (<inline-formula><mml:math id="M349" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mi mathvariant="normal">OB</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> plotted against modeled
(top) MG and (bottom) GH dissipation for the northern SCS <bold>(a–b)</bold>, central SCS <bold>(c–d)</bold>, and southern SCS <bold>(e–f)</bold>.
The solid lines indicate the one-to-one
relation: log<inline-formula><mml:math id="M350" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mi mathvariant="normal">OB</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> log<inline-formula><mml:math id="M351" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mi mathvariant="normal">GH</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> or
log<inline-formula><mml:math id="M352" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mi mathvariant="normal">OB</mml:mi></mml:msub><mml:mo>)</mml:mo><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> log<inline-formula><mml:math id="M353" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mi mathvariant="normal">MG</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. The dash lines indicate the linear fittings of the data.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://os.copernicus.org/articles/13/503/2017/os-13-503-2017-f10.png"/>

        </fig>

      <p>To assess the efficacy of the models in estimating the dissipation rates, we
show a direct comparison of observed dissipation rates versus modeled
dissipation rates in Fig. 10. It can be seen from Fig. 10 that the MG model
predicts the magnitude of the dissipation rates better than the GH model. The
linear fittings of the data,
<inline-formula><mml:math id="M354" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">log</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:mfenced close=")" open="("><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mi mathvariant="normal">OB</mml:mi></mml:msub></mml:mfenced><mml:mo>=</mml:mo><mml:mi mathvariant="italic">α</mml:mi><mml:msub><mml:mi mathvariant="normal">log</mml:mi><mml:mn mathvariant="normal">10</mml:mn></mml:msub><mml:mfenced open="(" close=")"><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mi mathvariant="normal">M</mml:mi></mml:msub></mml:mfenced><mml:mo>+</mml:mo><mml:mi mathvariant="italic">β</mml:mi></mml:mrow></mml:math></inline-formula>, are also shown in
Fig. 10, where <inline-formula><mml:math id="M355" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ε</mml:mi><mml:mi mathvariant="normal">M</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> represent the modeled dissipation rates.
Parameters <inline-formula><mml:math id="M356" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M357" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula> are given in Table 2. We also test the
linear regression with a <inline-formula><mml:math id="M358" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula>-test (Rice, 2006), and the results are given in
Table 2. For the MG model, the two-tailed test <inline-formula><mml:math id="M359" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>-values for the northern,
central, and southern SCS are 0.9966, 0.988, and 0.9651, respectively. These
values are larger than 0.05, which suggests no significant difference between
the observed and fitted values. However, for the GH model, the two-tailed
test <inline-formula><mml:math id="M360" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>-values for the northern (0.0087), central (0.0053), and southern
(0.0476) SCS are smaller than 0.05, which suggests that there are significant
differences between the observed and fitted values. The coefficients of
determination (<inline-formula><mml:math id="M361" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> are also given in Table 2. <inline-formula><mml:math id="M362" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> is the ratio of
the difference between the variance of the observed values and the variance
of the residuals from the fit to the variance of the observed values (Rice,
2006). It can be interpreted as the proportion of the variability of the
observed values that can be explained by the fitted values. The values of
<inline-formula><mml:math id="M363" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> from the MG model are larger than those from the GH model, which
suggests that the MG model predicts the observed data better than the GH
model. For the MG model, large <inline-formula><mml:math id="M364" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> in the central and southern SCS
suggest that the MG model works better in the central and southern SCS than
in the northern SCS. Small <inline-formula><mml:math id="M365" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> in the northern SCS is mainly due to the
elevated dissipation rates induced by shear instability since the MG model
largely underestimates these dissipation rates.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2" specific-use="star"><caption><p>Results of the linear regression and <inline-formula><mml:math id="M366" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula>-test.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="7">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1">Location</oasis:entry>  
         <oasis:entry colname="col2">Model</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M367" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M368" display="inline"><mml:mi mathvariant="italic">β</mml:mi></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math id="M369" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula> value</oasis:entry>  
         <oasis:entry colname="col6">Sig.</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math id="M370" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"/>  
         <oasis:entry colname="col3"/>  
         <oasis:entry colname="col4"/>  
         <oasis:entry colname="col5"/>  
         <oasis:entry colname="col6">(two-tailed)</oasis:entry>  
         <oasis:entry colname="col7"/>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">Northern SCS</oasis:entry>  
         <oasis:entry colname="col2">MG</oasis:entry>  
         <oasis:entry colname="col3">0.6517</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M371" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>3.178</oasis:entry>  
         <oasis:entry colname="col5">0.0042</oasis:entry>  
         <oasis:entry colname="col6">0.9966</oasis:entry>  
         <oasis:entry colname="col7">0.2373</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">GH</oasis:entry>  
         <oasis:entry colname="col3">0.2</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M372" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>7.0805</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math id="M373" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2.628</oasis:entry>  
         <oasis:entry colname="col6">0.0087</oasis:entry>  
         <oasis:entry colname="col7">0.1098</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Central SCS</oasis:entry>  
         <oasis:entry colname="col2">MG</oasis:entry>  
         <oasis:entry colname="col3">0.6721</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M374" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>3.2202</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math id="M375" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.0151</oasis:entry>  
         <oasis:entry colname="col6">0.988</oasis:entry>  
         <oasis:entry colname="col7">0.3352</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">GH</oasis:entry>  
         <oasis:entry colname="col3">0.1546</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M376" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>7.9507</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math id="M377" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>2.7892</oasis:entry>  
         <oasis:entry colname="col6">0.0053</oasis:entry>  
         <oasis:entry colname="col7">0.1267</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">Southern SCS</oasis:entry>  
         <oasis:entry colname="col2">MG</oasis:entry>  
         <oasis:entry colname="col3">0.646</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M378" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>3.421</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math id="M379" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>0.0437</oasis:entry>  
         <oasis:entry colname="col6">0.9651</oasis:entry>  
         <oasis:entry colname="col7">0.3799</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">GH</oasis:entry>  
         <oasis:entry colname="col3">0.1724</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M380" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>7.8608</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math id="M381" display="inline"><mml:mo>-</mml:mo></mml:math></inline-formula>1.9827</oasis:entry>  
         <oasis:entry colname="col6">0.0476</oasis:entry>  
         <oasis:entry colname="col7">0.1687</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

</sec>
</sec>
<sec id="Ch1.S4">
  <title>Discussion</title>
      <p>Our observations indicate that turbulent mixing in the upper ocean of the SCS
is spatially non-uniform, with strong turbulent mixing found in the northern
SCS. This spatial pattern is consistent with the mixing distribution reported
by Yang et al. (2016). Our estimates of diapycnal diffusivity
(<inline-formula><mml:math id="M382" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M383" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M384" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M385" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> in region 1 are similar to those
(<inline-formula><mml:math id="M386" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M387" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M388" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M389" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> of Tian et al. (2009) but almost 2
orders of magnitude smaller than those (<inline-formula><mml:math id="M390" display="inline"><mml:mo>∼</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M391" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M392" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M393" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
reported by Yang et al. (2016); these different values might be attributed to
various factors such as estimation methods and observation seasons. Diapycnal
diffusivities from Tian et al. (2009) and Yang et al. (2016) were estimated
with Gregg–Henyey–Polzin parameterizations, which depends on reference
dissipation. Different reference dissipations chosen in the parameterization
can make the estimated diapycnal diffusivity different. In addition, the data
used in the parameterization of Yang et al. (2016) span from 2005 to 2012 and
cover all the year round, while the microstructure data in our observation
just cover 1 month. Seasonal and inter-annual variations of internal waves in
the SCS (Huang et al., 2008; Yang et al., 2009) might affect the turbulent
mixing.</p>
      <p>The GH model and the MG model were derived from the eikonal model of Henyey
et al. (1986) which is applicable to parameterize the dissipation controlled
by wave–wave interactions that transfer energy from large-scale waves to
small-scale waves (MacKinnon and Gregg, 2005). The GH model is based on the
assumption that the waves are statistically stationary, with the energy of
small-scale waves and the shear of the large-scale waves maintaining a
particular relationship through the Garrett–Munk (GM) spectrum (Garrett and
Munk, 1975). It is typically evaluated for the internal wave field with the
GM spectral shape (Gregg, 1989). The MG model was first proposed by MacKinnon
and Gregg (2003) to parameterize the turbulence over the continental shelf.
It is found to be suitable for the wave field of the continental shelf in
which the energy and shear are dominated by the near-inertial motions,
internal tides, or low-frequency internal waves (MacKinnon and Gregg, 2003a;
Palmer et al., 2008; van der Lee and Umlauf, 2011). Recently it was found
that the MG model also successfully parameterizes the turbulent mixing in the
upper layer of the deep sea (Xie et al., 2013).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11" specific-use="star"><caption><p><bold>(a–f)</bold> Rotary spectra (clockwise plus counterclockwise) of
horizontal kinetic energy for the six moorings deployed in the SCS (1 cpd <inline-formula><mml:math id="M394" display="inline"><mml:mo>=</mml:mo></mml:math></inline-formula> 1 day<inline-formula><mml:math id="M395" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.
Spectra are averaged over <inline-formula><mml:math id="M396" display="inline"><mml:mrow><mml:mi>z</mml:mi><mml:mo>∈</mml:mo></mml:mrow></mml:math></inline-formula> [60 : 270] m.
The canonical Garrett and Munk spectrum is shown for reference (smooth
curve). The vertical lines represent various frequencies (<inline-formula><mml:math id="M397" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M398" display="inline"><mml:mrow><mml:msub><mml:mi>O</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math id="M399" display="inline"><mml:mrow><mml:msub><mml:mi>K</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mi mathvariant="normal">…</mml:mi></mml:mrow></mml:math></inline-formula>). The 95 % statistical significance level is
indicated by the vertical bar in the upper-right corner.</p></caption>
        <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://os.copernicus.org/articles/13/503/2017/os-13-503-2017-f11.png"/>

      </fig>

      <p>Statistical analysis shows the dissipation rates in the SCS to be
proportional to both the shear and buoyancy frequencies, in marked contrast
to the predictions of the GH model, but consistent with the predictions of
the MG model. The disagreement of the GH model might be associated with the
wave field in the SCS. Previous studies (Polzin et al., 1995; Wijesekera et
al., 1993) have indicated that the predictions of the GH model would exhibit
departure from the observed dissipation by more than 1 order of magnitude in
regions where the wave field deviates from the GM spectrum. Thus, it is
appropriate to examine the wave field in the SCS. Data obtained from six
moorings deployed in the SCS (Fig. 1a, yellow squares) were used to estimate
the horizontal kinetic energy spectra. Though the data were obtained from
different periods, they reflected the main characteristics of the wave field
in the SCS. The spectra (Fig. 11) show significant peaks in the local
inertial (<inline-formula><mml:math id="M400" display="inline"><mml:mrow><mml:mi>f</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and tidal frequencies (diurnal <inline-formula><mml:math id="M401" display="inline"><mml:mrow><mml:msub><mml:mi>O</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M402" display="inline"><mml:mrow><mml:msub><mml:mi>K</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>;
semidiurnal <inline-formula><mml:math id="M403" display="inline"><mml:mrow><mml:msub><mml:mi>M</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>; these peaks imply that energy was primarily dominated
by the near-inertial motions and internal tides. Within the internal wave
band, significant peaks were also observed at higher tidal harmonic
frequencies such as <inline-formula><mml:math id="M404" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M405" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M406" display="inline"><mml:mrow><mml:msub><mml:mi>D</mml:mi><mml:mn mathvariant="normal">5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (respectively, about three,
four, and five cycles per day). These higher tidal harmonic frequencies
mainly result from nonlinear interaction between internal waves (van Haren,
2003; van Haren et al., 2002; Xie et al., 2010). These energetic internal
tides and harmonic internal waves cannot be well described by the GM
spectrum. Furthermore, the spectra deviated from the GM spectrum at high
frequencies (<inline-formula><mml:math id="M407" display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula> &gt; 3 cpd), which is especially evident in
the spectra of the moorings from the northern SCS (mooring 1) and southern
SCS (mooring 3). These observations are not supportive of the assumption that
the GH model is based on. In contrast, some of our observations support the
MG model, such as the wave field being dominated by near-inertial waves and
internal tides, and the dissipation rates scale positively with shear and
stratification. Overall, the MG model succeeds in parameterizing the
turbulence in the SCS, except for some elevated dissipation rates induced by
shear instability. The MG model tends to underestimate these elevated
dissipation rates. This is not surprising because the MG model, which is
based on wave–wave interactions, represents bulk averages of turbulent
properties and does not reproduce individual shear instability events
(MacKinnon and Gregg, 2005).</p>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <title>Summary</title>
      <p>We analyzed observations of turbulent dissipation and mixing in the SCS with
microstructure data obtained from 26 April to 23 May 2010. The observations
are divided into four regions: region 1 is located to the west of the Luzon
Strait, region 2 is located to the northeast of Hainan Island, region 3 is
located in the central SCS, and region 4 is located in the southern SCS.
Strong turbulent mixing was observed in region 1, with the mean
<inline-formula><mml:math id="M408" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">ε</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> reaching
1.8 <inline-formula><mml:math id="M409" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M410" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">8</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M411" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, which is 9 times and 12 times larger
than the values in the central (2.1 <inline-formula><mml:math id="M412" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M413" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M414" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and
southern (1.5 <inline-formula><mml:math id="M415" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M416" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">9</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> W kg<inline-formula><mml:math id="M417" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> SCS, respectively. Elevated
<inline-formula><mml:math id="M418" display="inline"><mml:mrow><mml:mo>〈</mml:mo><mml:mi mathvariant="italic">κ</mml:mi><mml:msub><mml:mo>〉</mml:mo><mml:mi mathvariant="normal">T</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> were also found in region 1, i.e., <inline-formula><mml:math id="M419" display="inline"><mml:mi>O</mml:mi></mml:math></inline-formula>
(10<inline-formula><mml:math id="M420" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> m<inline-formula><mml:math id="M421" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> s<inline-formula><mml:math id="M422" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, which is almost an order of magnitude higher
than the values of the central and southern SCS. The turbulent mixing in
different regions displays different mixing features, to which shear variance
and stratification have made a significant contribution. In region 1, the
shear was stronger and the stratification was weaker than those in other
regions. Shear instability events occasionally occurred in these conditions
and produced elevated dissipation and diapycnal diffusivity. Although the
turbulent patches induced by shear instability were occasional and sparse,
they significantly contributed to the turbulent mixing in the water column.
In regions 2–4, the water column was characterized by weak shear and strong
stratification. Shear was no longer sufficient to produce subcritical
Richardson numbers and the turbulence was weak. The strong spatial
correlation between high dissipation rates and strong shear presented in the
thermocline in region 1 suggests that shear was one of the important drivers
of the elevated turbulent mixing. The analysis of surface winds, internal
waves, and barotropic tides indicates that the spatial distribution of
turbulent mixing with elevated dissipation rates and diapycnal diffusivity
concentrated in region 1 does not result from the measurement time or surface
winds. The energetic internal waves and internal tides generated near the
Luzon Strait are expected to make a dominant contribution to create this
mixing pattern. Unfortunately, we have only one profile of microstructure
measurement and short time series of current velocity obtained by the
shipboard ADCP for each station; thus, it is impossible to separate the
internal waves of various frequencies and explore their respective
contributions to the dissipation. In order to resolve the internal waves in
various frequencies, a long time series of fine-scale current velocities is
required. We suggest further observations be done with frequent
microstructure measurements and long time series of current velocity
measurements to identify the dominant mixing mechanism in the northern SCS.</p>
      <p>To predict realistic climate and circulation, mixing must be accurately
represented in ocean models. Mapping of the dissipation rates throughout the
ocean is a daunting task. However, this task can be made considerably easier
if mixing can be estimated from more easily observed or modeled quantities,
such as shear, stratification, and latitude. Two models (the GH model and MG
model) were evaluated for parameterizing the dissipation rate in the SCS.
Statistical analysis shows the dissipation in the SCS to be proportional to
both the shear and buoyancy frequencies, in marked contrast to the
predictions of the GH model, but consistent with the predictions of the MG
model. The replication of the turbulence behavior greatly depends on the
correct choice of model and appropriate tuning of the free parameters. The
resolution of the shear and stratification is another factor in determining
the success of models in parameterizing the turbulence (Palmer et al.,
2013). Although the MG model can reproduce the dissipation in the SCS for
our chosen vertical resolution (16 m), whether the distribution of the
observed dissipation would change with finer resolution of shear and
stratification is still an open problem. However, at least on the scale of
internal waves (16 m), the MG model is clearly a better model than the GH
model for the parameterization of turbulence in the upper ocean of the SCS,
which provides a useful reference for modelers. Additional data with higher
resolution are required to robustly fix this model in the near future.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability">

      <p>The research data can be accessed from the
corresponding author Xiao-Dong Shang, whose email is <?xmltex \hack{\mbox\bgroup}?>xdshang@scsio.ac.cn<?xmltex \hack{\egroup}?>.</p>
  </notes><notes notes-type="authorcontribution">

      <p>Xiao-Dong Shang and Gui-Ying Chen designed and carried out the experiments.
Chang-Rong Liang prepared the manuscript with contributions from all
co-authors.</p>
  </notes><notes notes-type="competinginterests">

      <p>The authors declare that they have no conflict of interest.</p>
  </notes><ack><title>Acknowledgements</title><p>This work is supported by the National Natural Science Foundation of China:
41630970, 41376022, 41676022, and 41521005. The data we used are from the
South China Sea Institute of Oceanology. <?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>
Edited by: John M. Huthnance<?xmltex \hack{\newline}?>
Reviewed by: Hans Burchard and one anonymous referee</p></ack><ref-list>
    <title>References</title>

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Centuroni, L. R., Chao, S. Y., Chang, M. H., Farmer, D. M., Fringer, O. B.,
Fu, K. H., Gallacher, P. C., Graber, H. C., Helfrich, K. R., Jachec, S. M.,
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    <!--<article-title-html>Spatial distribution of turbulent mixing in the upper ocean of the South China Sea</article-title-html>
<abstract-html><p class="p">The spatial distribution of the dissipation rate (<i>ε</i>)
and diapycnal diffusivity (<i>κ</i>) in the upper ocean of the South China
Sea (SCS) is presented from a measurement program conducted from 26 April to
23 May 2010. In the vertical distribution, the dissipation rates below the
surface mixed layer were predominantly high in the thermocline where shear
and stratification were strong. In the regional distribution, high
dissipation rates and diapycnal diffusivities were observed in the region to
the west of the Luzon Strait, with an average dissipation rate and diapycnal
diffusivity of 8.3  ×  10<sup>−9</sup> W kg<sup>−1</sup> and
2.7  ×  10<sup>−5</sup> m<sup>2</sup> s<sup>−1</sup>, respectively, almost 1 order of
magnitude higher than those in the central and southern SCS. In the region to
the west of the Luzon Strait, the water column was characterized by strong
shear and weak stratification. Elevated dissipation rates (<i>ε</i> &gt; 10<sup>−7</sup> W kg<sup>−1</sup>) and diapycnal diffusivities
(<i>κ</i> &gt; 10<sup>−4</sup> m<sup>2</sup> s<sup>−1</sup>), induced by shear
instability, occurred in the water column. In the central and southern SCS,
the water column was characterized by strong stratification and weak shear
and the turbulent mixing was weak. Internal waves and internal tides
generated near the Luzon Strait are expected to make a dominant contribution
to the strong turbulent mixing and shear in the region to the west of the
Luzon Strait. The observed dissipation rates were found to scale positively
with the shear and stratification, which were consistent with the
MacKinnon–Gregg model used for the continental shelf but different from the
Gregg–Henyey scaling used for the open ocean.</p></abstract-html>
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